Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3171 |
Symbol | |
ID | 4253741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3790109 |
End bp | 3790753 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638119812 |
Product | outer membrane lipoprotein LolB |
Protein accession | YP_735298 |
Protein GI | 113971505 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00520564 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAATT TGAAGCGCTT CACAAAATCC ATTTTCTCTT GTATCGCCTT GAGCGGCCTA TTGTTTTTAG GCGGCTGCGA GACCCTGCCG CCAACGACAG ATCTCAGCCC TATAACCGTC GACAATGCTG CCCAAGCCAA GGCGTGGGAG TTACAGGGGA AACTCGCCAT CCGCACGCCA GAAGATAAGC TCAGTGCCAA TCTCTATTGG CGCCACAGTG AGGAACGGGA TGAACTCACC CTCACAACCA TGTTAGGCAC CACAGTGTTA ACCTTGGATG CTACGCCTAA CTCTGCTCAT CTGCATGTCG ATGGCAAAGA TTTTCGAGAT AGCAACGCCC AAGCATTACT CGAGCGAGTC AGTGGCTGGT CCATCCCGAT TAACGACTTA CCCCTTTGGA TCACAGGCCA AATCGGCGCT TTAGACCGTG TGCTTGCCGT CGATAGCAAT GGCAAAACCA AACAAATTCA AAACTCGCAA ACCTTGCCGC CTTGGGACGT CACATTTTTG AGTTGGCAGC CCCAAAGCGG TGCTGAGGTA CCCTATCAGT TAAAGCTTGA ACGTGGTGAT TTACAGCTCA AGCTGCAACT CAATCAATGG CAAGCCTTAG GTAAACCCTC AATAATGCTC GGAGAAAAAC CTTAG
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Protein sequence | MNNLKRFTKS IFSCIALSGL LFLGGCETLP PTTDLSPITV DNAAQAKAWE LQGKLAIRTP EDKLSANLYW RHSEERDELT LTTMLGTTVL TLDATPNSAH LHVDGKDFRD SNAQALLERV SGWSIPINDL PLWITGQIGA LDRVLAVDSN GKTKQIQNSQ TLPPWDVTFL SWQPQSGAEV PYQLKLERGD LQLKLQLNQW QALGKPSIML GEKP
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