Gene Shewmr4_3171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3171 
Symbol 
ID4253741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3790109 
End bp3790753 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content50% 
IMG OID638119812 
Productouter membrane lipoprotein LolB 
Protein accessionYP_735298 
Protein GI113971505 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis 
TIGRFAM ID[TIGR00548] outer membrane lipoprotein LolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00520564 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATT TGAAGCGCTT CACAAAATCC ATTTTCTCTT GTATCGCCTT GAGCGGCCTA 
TTGTTTTTAG GCGGCTGCGA GACCCTGCCG CCAACGACAG ATCTCAGCCC TATAACCGTC
GACAATGCTG CCCAAGCCAA GGCGTGGGAG TTACAGGGGA AACTCGCCAT CCGCACGCCA
GAAGATAAGC TCAGTGCCAA TCTCTATTGG CGCCACAGTG AGGAACGGGA TGAACTCACC
CTCACAACCA TGTTAGGCAC CACAGTGTTA ACCTTGGATG CTACGCCTAA CTCTGCTCAT
CTGCATGTCG ATGGCAAAGA TTTTCGAGAT AGCAACGCCC AAGCATTACT CGAGCGAGTC
AGTGGCTGGT CCATCCCGAT TAACGACTTA CCCCTTTGGA TCACAGGCCA AATCGGCGCT
TTAGACCGTG TGCTTGCCGT CGATAGCAAT GGCAAAACCA AACAAATTCA AAACTCGCAA
ACCTTGCCGC CTTGGGACGT CACATTTTTG AGTTGGCAGC CCCAAAGCGG TGCTGAGGTA
CCCTATCAGT TAAAGCTTGA ACGTGGTGAT TTACAGCTCA AGCTGCAACT CAATCAATGG
CAAGCCTTAG GTAAACCCTC AATAATGCTC GGAGAAAAAC CTTAG
 
Protein sequence
MNNLKRFTKS IFSCIALSGL LFLGGCETLP PTTDLSPITV DNAAQAKAWE LQGKLAIRTP 
EDKLSANLYW RHSEERDELT LTTMLGTTVL TLDATPNSAH LHVDGKDFRD SNAQALLERV
SGWSIPINDL PLWITGQIGA LDRVLAVDSN GKTKQIQNSQ TLPPWDVTFL SWQPQSGAEV
PYQLKLERGD LQLKLQLNQW QALGKPSIML GEKP