| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3139 |
|---|
| Symbol | |
|---|
| ID | 4253710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3759133 |
|---|
| End bp | 3759810 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638119781 |
|---|
| Product | ribosomal large subunit pseudouridine synthase A |
|---|
| Protein accession | YP_735267 |
|---|
| Protein GI | 113971474 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATT TTATTTACCA ACCACCGACA ACTCCCTGGC TCGATGTGCT TTACCAAGAT
AAAGACATTA TCGTGGTCAA CAAGCCTTCG GGATTATTGT CCGTGCCAGG TCGCGATCCC
GCCCATTACG ACAGTGTTTA CGCCCGAGTA AAAGCCGAGC ATCCCCATTG CCAAATCGTC
CATCGCCTCG ACATGGCGAC CTCAGGTGTC ATGGTGGTTG CGCTCATTCG TAGCGCCGAG
CGCGAGCTAA AACGCCAATT TCACGATAGA GAAACCAGCA AAACCTATCT CGCTCGGGTG
GCTGGTCATA TCAAAAACGA TACTGGCAGT GTGGATTACC CGCTAATCTG TGACTGGCCC
AATCGCCCAA AACAGAAGGT TGACCACGAA ATTGGTAAAC CCTCATTAAC TCACTTTGAG
GTGTTAAGCC GCGCCAAACG CTCGACTCTC GTTAAGCTAA AGCCGATTAC TGGACGCTCA
CACCAACTCA GGGTGCATAT GATGGCACTT GGGCATCCTA TTCTCGGCGA CGGCTTTTAT
GCCGATCCGC TGGCAAAATC CTTAGCACCG CGATTACTAC TCCACGCAGC AGAACTGACC
ATAAAACACC CTTATACGGG TGAGAGCATG ACGTTCAGTG CCGATGTCCC CTTTTGTGAG
CCAGAAGGTG AGCAATGA
|
|---|
| Protein sequence | MTDFIYQPPT TPWLDVLYQD KDIIVVNKPS GLLSVPGRDP AHYDSVYARV KAEHPHCQIV
HRLDMATSGV MVVALIRSAE RELKRQFHDR ETSKTYLARV AGHIKNDTGS VDYPLICDWP
NRPKQKVDHE IGKPSLTHFE VLSRAKRSTL VKLKPITGRS HQLRVHMMAL GHPILGDGFY
ADPLAKSLAP RLLLHAAELT IKHPYTGESM TFSADVPFCE PEGEQ
|
|---|
| |