Gene Shewmr4_3108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3108 
Symbol 
ID4253679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3718420 
End bp3719391 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content49% 
IMG OID638119750 
Productdiguanylate cyclase with GAF sensor 
Protein accessionYP_735236 
Protein GI113971443 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATTAC CTCCCATTCC TGAGAATGAG TTACAACGTT TAGCCACCCT GAGGGCGCTG 
AATGTACTCG ATACCGATGC CGAGGAAAGA TTCGACAGGA TCACTCGGCT AACGCGGCGG
ATCTTTGCCC TGCCGATTTG CGTGGTGACC CTAGTCGACG CGAATCGTCA GTGGTTTAAG
TCTCGCCAAG GGTTAGAGGT GACTGAAACT CCAAGGGATA TTTCCTTTTG CGCCCATGCT
ATTAACCATG ATGGCGTGTT TATCGTTAAC GATGCCCTCA AGGATCCCCG TTTTTTCGAT
AACCCCTTAG TTACCGAGCC TCCGCATATC CGGTTTTATG CGGGTTATCC TCTTACCATT
CAAGGGGAAT ATCGGGTCGG GACGCTGTGT TTAATCGGCA ATGAGCCGCG GGAGTTTAGC
GACGATGACA TTGAAACCTT AACGGATCTG GGGCAAATGG TTGAAGCCGA ACTGCTGTTT
ATCGCGCAAA ATACCTTAGA TCCGCTCACC ATGATCTCTA ATCGGCGTGG GTTTGAACTG
CTAGCCTATC AATCTCTTGC CAGTTGTCGA CGTACTAACG CAAAAGCGGC GTTAGTGTTT
TTTGACCTCG ACTTTTTTAA AGAAGTAAAC GACAGCTTTG GCCATCGTAA GGGCGACCAA
GTGCTCTATG ATTTTGCCCA TATTTTAATG GCAGCGTTTA GAGAGTCCGA TGTGATAGCC
AGATTGGGCG GAGATGAGTT TGTGGTGCTG CTCAGTTTTG TGCAGCCTGA TACCGTCAGT
TTTGCCATCG AGCGTTTTAA GTTATTGCTT GAGCAATATA ATCAGCAACG TCCGCAGCAA
CGCCCGTTAG AAACCAGTAT CGGTGTTGCC CATTGGTCGC CAGAATCCGA TATGAACCTT
GAGGATTTAC TCGATACCGC CGACCGGGCT ATGTATGAAA ACAAAGCCTT ACACCACTTG
GATAAGCCCT AG
 
Protein sequence
MQLPPIPENE LQRLATLRAL NVLDTDAEER FDRITRLTRR IFALPICVVT LVDANRQWFK 
SRQGLEVTET PRDISFCAHA INHDGVFIVN DALKDPRFFD NPLVTEPPHI RFYAGYPLTI
QGEYRVGTLC LIGNEPREFS DDDIETLTDL GQMVEAELLF IAQNTLDPLT MISNRRGFEL
LAYQSLASCR RTNAKAALVF FDLDFFKEVN DSFGHRKGDQ VLYDFAHILM AAFRESDVIA
RLGGDEFVVL LSFVQPDTVS FAIERFKLLL EQYNQQRPQQ RPLETSIGVA HWSPESDMNL
EDLLDTADRA MYENKALHHL DKP