| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3086 |
|---|
| Symbol | |
|---|
| ID | 4253657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3690291 |
|---|
| End bp | 3691721 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638119728 |
|---|
| Product | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
|---|
| Protein accession | YP_735214 |
|---|
| Protein GI | 113971421 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02198] rfaE bifunctional protein, domain I
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.521766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTT CTCTGCCAGC ATTTGAAAAA GCCAAAGTGT TAGTTGTCGG CGATGTGATG
TTAGATCGCT ACTGGGTTGG GCCGACGGGA CGTATCTCGC CCGAAGCGCC AGTGCCCGTG
GTGAAGATTA ACCAAGTCGA AGACAGACCG GGTGGAGCGG CCAACGTAGC GCTAAATATC
GCGACCCTAG GCGGCCAAGT ACAATTGGCG GGGTTAGTGG GCGAGGATGA TACCGCTAAG
GCGTTAACCC TTGGGGTGCA AGCTCTGGGT GTTGAACCAC AATGGCTAAA AATTGCCGAC
AAACCGACCA TTACCAAACT GCGGGTACTG TCGCGTAACC AGCAGCTTAT TCGCCTCGAT
TTTGAAGAGT CCTTCGATAA GCAGGATAGT GCGCGTTTAC TTAAACAGTC TGAAGCCTTA
CTCGATTCGG TCGATGTGGT GGTATTGTCG GATTATGCGA AGGGTGCTAT CGATAAGCCG
CAGGATTTTA TTGCGCTGGC TCGCGCTAAA GGCGTGAAAG TGCTTGTCGA TCCAAAGGGT
TCCGATTTTA GCCGTTACCA TGGCGCTTCA CTCATCACAC CCAATATGAG TGAATTTGAA
GCCGTGGTTG GCGCGGTAAC CTCTGAGGCG GATCTGCTCG AAAAGGCCCG AGGCTTACTC
AATAAACACC AGTTCGACGC TATCTTAGTC ACTCGCTCCG AAAAGGGCAT GACCTTAGTA
ACGGCCAATG CCCCTGAGTT ACACATTCCT ACGGTGGCCC GTGAGGTGTA TGACGTAACA
GGCGCCGGTG ATACTGTGAT TTCTGCTCTC GCGACGTCAC TCGCGGCGGG CGCTGAACTG
CCACAGGCCT GCGCCATTGC AAATACCGCC GCTGGAGTTG TGGTGGGTAA ATTGGGCACT
TCAACCGTGT CTCGTATCGA GCTGATTGAA GCCTTAGCTC TGCACCACGG TGAGTCGGGT
TTTGGGGTGG TGAGTGAAGA TCAACTTGCC TATGCCCTAG AGCAAGCCAA ATTGCGCGGC
GAGCGAGTGG TGATGACCAA CGGTTGCTTC GATATTCTGC ATGCGGGGCA CGTCAGTTAT
CTTAAACAAG CTAAAGCCTT AGGTGACAGA TTGATCGTGG CTGTGAATGA TGACGCCTCG
GTTAAACGCT TAAAAGGTGA AGGTCGCCCA GTCAATCAGG TGGATAGACG TATGGCGGTG
TTAGCGGGAT TAGCCGCCGT CGATTGGGTC GTGCCTTTTA GTGAAGACAC GCCACAGCGG
ATCATCGCCA GACTGCTCCC CGATCTCTTA GTGAAAGGCG GCGATTATAA GATTGAAGAT
ATTGCCGGCG GCGCGGAAGT AATCGCCGCT GGCGGTCAAG TTCAAGTGCT GGGCTTTGAA
GACGGCATAT CAACGACGGC GATTATCCAA AATATCATGG CAAAACAGTG A
|
|---|
| Protein sequence | MKVSLPAFEK AKVLVVGDVM LDRYWVGPTG RISPEAPVPV VKINQVEDRP GGAANVALNI
ATLGGQVQLA GLVGEDDTAK ALTLGVQALG VEPQWLKIAD KPTITKLRVL SRNQQLIRLD
FEESFDKQDS ARLLKQSEAL LDSVDVVVLS DYAKGAIDKP QDFIALARAK GVKVLVDPKG
SDFSRYHGAS LITPNMSEFE AVVGAVTSEA DLLEKARGLL NKHQFDAILV TRSEKGMTLV
TANAPELHIP TVAREVYDVT GAGDTVISAL ATSLAAGAEL PQACAIANTA AGVVVGKLGT
STVSRIELIE ALALHHGESG FGVVSEDQLA YALEQAKLRG ERVVMTNGCF DILHAGHVSY
LKQAKALGDR LIVAVNDDAS VKRLKGEGRP VNQVDRRMAV LAGLAAVDWV VPFSEDTPQR
IIARLLPDLL VKGGDYKIED IAGGAEVIAA GGQVQVLGFE DGISTTAIIQ NIMAKQ
|
|---|
| |