| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3051 |
|---|
| Symbol | |
|---|
| ID | 4253622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3650515 |
|---|
| End bp | 3651405 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638119693 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_735179 |
|---|
| Protein GI | 113971386 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000517942 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0334887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTTA AAGTGCTGCG TTATTTTATC GAGATCATCG ATGCCGGCGG TTTTGGTAAG
GCCAGCGAAA AGGTTCACCT CACCCAACCC GCCCTCTCCA AGGCGCTGCG CCAATTAGAG
GAAGAACTCG ATTTGGTACT ACTCGAGCGC GGCAAGCGTG GCACTCAGGT TAAGCTTACC
CAAGCGGGAG AAGTGGTCTA TCGCCATGGA AAGGAGTTGC TCGCTGGGCG ACAACGCATG
CTGGCCGAAC TCAGTGCCCA GCGCAGTTTA ACCGCAGGCG AATTGAAACT CGGTCTTGCG
CCACTCGGCA GTGCTGAGAT TTTTGCTCCT ATCATTGCCA AATATCGCCA GCAATATCCG
CAAATTGATA TGCACCTGCT GGTGCGCGGC GGCGTGGAGC AAACTTTAGC GATTCAAAAG
GGTGAAATTG AACTGGCCAC CGGGATTATT AACTTCGACG ATGGTTACCA CGGCATTCGG
GTGTTTAACG ATCCCATGGT GGTGGTGCTG CCCAAGGAGA ATCCCCTCAC CTCACGACCA
ATGCTGTCGA TCCACGACTT AGTCGACGAG CCACAAGTGA TGTTTGAAAC CGAATACACC
TTGTATCAAC TGGTATTAAC CGCTTGCCAA CACGCGGGAT TTACCCCTAA AAACATCACT
CGAGTCAGCC AAGCCGACTT CGGGATCGCC CTCGTGGCGG CGGGCACGGG CGTGATGATA
CTGCCGCGCT CTATCGCGCG GCGTTACAGT GTATCGGGAG TGGTGAATAT TCCATTGGCG
AGTGACGAAC TGCGCTGGGA ACTATCGCTG TTTTGGCGCA AAGAACAGGT ATTGTCCTTT
GCGGCAAAAG CGATGATTGC GTTAGTGGAG AAACACTTAA CGCAAAAGTA G
|
|---|
| Protein sequence | MDLKVLRYFI EIIDAGGFGK ASEKVHLTQP ALSKALRQLE EELDLVLLER GKRGTQVKLT
QAGEVVYRHG KELLAGRQRM LAELSAQRSL TAGELKLGLA PLGSAEIFAP IIAKYRQQYP
QIDMHLLVRG GVEQTLAIQK GEIELATGII NFDDGYHGIR VFNDPMVVVL PKENPLTSRP
MLSIHDLVDE PQVMFETEYT LYQLVLTACQ HAGFTPKNIT RVSQADFGIA LVAAGTGVMI
LPRSIARRYS VSGVVNIPLA SDELRWELSL FWRKEQVLSF AAKAMIALVE KHLTQK
|
|---|
| |