| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3039 |
|---|
| Symbol | |
|---|
| ID | 4253610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3633296 |
|---|
| End bp | 3633901 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638119681 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_735167 |
|---|
| Protein GI | 113971374 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
|---|
| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000888459 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.414715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA CTATGAAACA ATTTAAACTG ATTTTTGTGC TGGCTGCCGT AATGGGTCTG
GCTGCATGTC AATCGAAAGT CGAGTATGGC GATGCCACAG AAGTGGAAAC CGTTAACGAA
AACTTTGGCT CAACGGATCT GCAAGCCATC GCCGCTAAGA TGGTCGATAG CATGATGACT
TTCCCGCCAA TCGTTGCTAT GACAGCGAAC AACCGCCCAA TTTTGTTTGT CGATAGCATC
AAAAACAAAA CCTCTGAGCA TATCGATACA GAGTCTGTGA CCGACTCTAT CAGCAACAAG
TTACTGCGCT CAGGCAAGTT CCGTTTTATC GACATGACAA AAGTAGATTC AGTTCGTAAG
CAACTGGATT ACCAAAACAA TACCGGTATG GTTGATCCAT CAACCGCCAT CAAGTTTGGC
CGTCAAATCG GCGCCCAATA CATGCTGTAT GGCAACCTGT CTAGCATCGT TAAGCAAGAT
GGCAGCACCA AAGACGTTTA CTACAAGATG ACTATGCGTC TGATGGACTT AGAAACAGGC
CTGATCGAGT GGTCTGACGA AAAAGAAATC CGTAAGACTA AGTCTAAGTC TTTCTTAGGC
ATGTAA
|
|---|
| Protein sequence | MELTMKQFKL IFVLAAVMGL AACQSKVEYG DATEVETVNE NFGSTDLQAI AAKMVDSMMT
FPPIVAMTAN NRPILFVDSI KNKTSEHIDT ESVTDSISNK LLRSGKFRFI DMTKVDSVRK
QLDYQNNTGM VDPSTAIKFG RQIGAQYMLY GNLSSIVKQD GSTKDVYYKM TMRLMDLETG
LIEWSDEKEI RKTKSKSFLG M
|
|---|
| |