| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2995 |
|---|
| Symbol | |
|---|
| ID | 4253566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3583325 |
|---|
| End bp | 3584950 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638119637 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_735123 |
|---|
| Protein GI | 113971330 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00226615 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.196783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGTC TTCAAATAAA ACAAAAGATG TTTATTGGCA TTCTCGTGCC ACTTGTTATG
CTTCTAACTA TCGGTTTTAT CGCTATCAAC ATGATGGGAA AAATCGAATA TGGTGTCGAA
CGTATCTATA ACGACCGAGT CGTCCCCCTC GATGATCTTA AAGTTATTGC GGATAAATAT
GCCGTCGATG TGATTGATGC GGTGAACAAA GCCAATGCTG GCGGTATTAG TGCTTCAGAA
ACTATCAATG CACTCGATAG CGCCAAATCC ATTGTAGATC AACGCTGGCA TAAGTATCTC
GCCACAGAGC TCACCAAAGA AGAGTCTCAA CTCGCGCAAC AAGCCGAACG TTTATTCATT
CCCGCCAATG GGCAAATAGA ACAATTAATC GCTTATCTCA GAGGAGTTAA TGGTGATGTC
GTTCATAAGC TGAATGACAA AATATTGCCT CTATATCAAG CCATAGACCC TATCAGCGGT
AAAGTCTCCG AACTTATCGA TCTACAAATT AAGATTGCTG GGCAAGAAAG AGATAGCGTA
AAAAGTATCT ATCAATCATC CATTTCCATA TTTATTATTC TCGCAGGGAT GGCAATGCTG
ATCAGCATAG TGATTGGACT CTGGGTCAAT CGCAGTGTGA TGAATCCTAT TCGCGATATA
GTTCAAAACC TGAAAATCAT TCGGCAAGAC TCGGATCTCA CGGTGAAGTT TAAAACCTTC
AACGATGATG AGCTCGGGCA GATCTCCACT AGCCTCACCC AAGTTATCGA GCACTTACGG
GGGATCTTAC ACTCTATCGC CGAAGCCGCG AATACGGTGA ATAGCTCGGC CACTGAGTTA
GGTAGTTTTA CCCAAGAAAC CAACAAACGC ATGCAGCAGC AACAGGCGGA AACCGAACAA
ACCGCCACCG CCATGAATGA GATGACGGCC ACGGTCGCCG AGGTGGCTCA AAGCGCCGCC
GCAGCAGCGG ATTCAGCTAA GGATGCCGAT AATTACGCAG CCAATGGTAA TCACATTGTG
ATGCAGTCCA TCACCAGCAT GTCGCAACTT TCTGAGCAAA TTCAAAAAAC GGCGCAAGTG
ATTGGCTTTT TATCCAATGA AAGTCAAAAC ATCGGCCGAG TATTAGATGT GATCAAAAGC
ATTGCCGAAC AAACCAATCT ACTGGCACTC AATGCAGCCA TTGAAGCCGC CCGCGCCGGA
GAGCAAGGCC GAGGCTTTGC GGTGGTCGCC GACGAAGTCC GGACATTGGC GCAGCGCACC
CAAAAATCAA CCCAAGAAAT TGAAGCGATG ATCGCCACTC TGCAGCAAGG AGTTAAAGAA
GCCGTGAATG CGATGGAAGT GGGGATCAAT CAAGTCGATG ATGCCAACGA TAAGGCGAAT
CAAGCTGGTC AAGCTTTAAA AGAGATTGTC GCGTCCGTCG ATAACATCAC TGAGCTAAAT
ACCCATATCG CTACGGCTGC CGAGGAGCAA AGTAGCGTCG CCGAGAGCAT AAACCGTAGC
ATTATTGCCA TTAGCGATAT TTCCGAACAC TCCACAAATT CGGCCTTAGA GTTGAGTGAG
TCGGTGATGA ATCTGACTAA GCTTGCCAAC AGTATGCGTA ATCAGGTGAG TGCATTCAGA
CTCTAG
|
|---|
| Protein sequence | MNGLQIKQKM FIGILVPLVM LLTIGFIAIN MMGKIEYGVE RIYNDRVVPL DDLKVIADKY
AVDVIDAVNK ANAGGISASE TINALDSAKS IVDQRWHKYL ATELTKEESQ LAQQAERLFI
PANGQIEQLI AYLRGVNGDV VHKLNDKILP LYQAIDPISG KVSELIDLQI KIAGQERDSV
KSIYQSSISI FIILAGMAML ISIVIGLWVN RSVMNPIRDI VQNLKIIRQD SDLTVKFKTF
NDDELGQIST SLTQVIEHLR GILHSIAEAA NTVNSSATEL GSFTQETNKR MQQQQAETEQ
TATAMNEMTA TVAEVAQSAA AAADSAKDAD NYAANGNHIV MQSITSMSQL SEQIQKTAQV
IGFLSNESQN IGRVLDVIKS IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRTLAQRT
QKSTQEIEAM IATLQQGVKE AVNAMEVGIN QVDDANDKAN QAGQALKEIV ASVDNITELN
THIATAAEEQ SSVAESINRS IIAISDISEH STNSALELSE SVMNLTKLAN SMRNQVSAFR
L
|
|---|
| |