| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2993 |
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| Symbol | |
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| ID | 4253564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3580738 |
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| End bp | 3581709 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119632 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_735121 |
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| Protein GI | 113971328 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000045802 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.354843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATTTCGGCAA CACAAACTGG CCTGAGATTG
GATCAAGCAC TGGCTGAGTT GTTCCCAGAT TACTCGCGCA CGCGCATCAA GGAATGGATC
CTATCTGATG CAGTCTATGT CGATGGCGTG ATGGTCAATA AGCCGCGCGA AAAGGTATTC
GAGCTGCAAC GCATTGAAAT TAATGCCACG CTCGAAGAAG AAGTGCATGC GGCCGCACAA
GCTATTGAGC TGGATATTGT CTATGAAGAC GATGATATCT TAGTCATCAA TAAACAAGCG
GGCTTAGTGG TTCACCCCGG TGCTGGCAAT GCCGATGGCA CTTTGATGAA CGCCCTGCTA
CATCATTGCC CTAATATCGA GCACGTGCCA CGTGCGGGTA TTGTGCATCG TTTGGATAAA
GACACTACAG GTTTGATGGT GGTGGCCAAA ACGGTAGAAG CACAAACTCA CTTAGTTGCC
GCGTTGCAAG CCCGTGAAAT CACCCGTGAG TATGAGGCGA TTGTCCTCGG CACTATGACG
GCGGGCGGTA CAGTCGATGA GCCTATTGGT CGTCATCCGA CAAAACGTAC CCACATGGCG
GTGCATCATT CGGGCAAACC CGCGGTGACC CATTACCGTG TTGCGGAAAA ATTCCGTAAT
CACACCCGTT TAAGATTGCG TTTAGAATCG GGCCGTACTC ACCAAATTCG TGTGCATATG
GCGTATATCG GCCATGTGCT GGTGGGCGAT CCTGTTTATG GTGGTCGTCC AAAACCACCC
AAGGCGGCAA GCCCAGAGTT TTTCGAGATC CTGAAAAACT TTAAACGCCA AGCACTGCAT
GCGGTGCGTC TGGAGTTAGC GCATCCTGTG ACTTGTGAAA TCATGAGCTG GACAGCACCT
ATCCCAGAAG ACATGGTTAT TTTGACTAAG GCGCTGCGTC AAGACACCTT AGAACACCCA
GTCGAGTACT AA
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| Protein sequence | MTQEINLKSE ISATQTGLRL DQALAELFPD YSRTRIKEWI LSDAVYVDGV MVNKPREKVF
ELQRIEINAT LEEEVHAAAQ AIELDIVYED DDILVINKQA GLVVHPGAGN ADGTLMNALL
HHCPNIEHVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREITRE YEAIVLGTMT
AGGTVDEPIG RHPTKRTHMA VHHSGKPAVT HYRVAEKFRN HTRLRLRLES GRTHQIRVHM
AYIGHVLVGD PVYGGRPKPP KAASPEFFEI LKNFKRQALH AVRLELAHPV TCEIMSWTAP
IPEDMVILTK ALRQDTLEHP VEY
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