| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2980 |
|---|
| Symbol | |
|---|
| ID | 4253551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3558887 |
|---|
| End bp | 3560536 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119616 |
|---|
| Product | glutamate--cysteine ligase |
|---|
| Protein accession | YP_735108 |
|---|
| Protein GI | 113971315 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2918] Gamma-glutamylcysteine synthetase |
|---|
| TIGRFAM ID | [TIGR01434] glutamate--cysteine ligase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAGATA AGCCTCAAAA TAAAGGTCTG ACTGTTAACC TTGTCGCGAT AGCGAATCAC
CAATCAGAGA AGCGCAAATT GAAGCCATTC AATGAATTAG TACAACATTT CTCGGACGCT
CAAGGGCGTG CCGCACTCCT TGGCATGTTA CGTGGAATTG AGCGTGAAGC GCTGCGTATC
GACGAGTCAG GCTACCTTGC GTTAGATGGT CATCCATTAG AGCTTGGCTC GGCATTAACG
CATTCGCGCA TTACGACAGA TTACAGTGAA GCACTGCTTG AATTTATCAC GCCGGTAAAC
AATCAAGTTG GTCCCCTATT GCAAGGACTC ACCGAGACCC ATGCCTTTAG CGTGCGTCAT
TTGCATGGTC AGCGCCTGTG GCCCGTGAGC ATGCCATGTT ACGTGAAGGA TGAGCAGAAT
ATTCCGGTCG CCCGTTATGG CAGCTCTAAC ACGGGTAAGA TGAAAACCTT GTATCGCAAG
GGCTTAACCT ACCGTTATGG TGCCTTGATG CAGATCATCT CTGGGGTGCA TTTTAACTTC
TCGGTATCAC AGGAATTGTG GCAAAGCCTC TATGAGTTGA GTGACAAAAG CGTGAGCTTC
GAGGATTTTA TCTCCGAATC TTACTTTGGC CTTATTCGCA ATTACCGCCG TTTAGTCTGG
GTATTACCTT ATCTGTTTGG GGCATCGCCT GCGCTGTGCA GCTCCTTTAT CAAAGGGCAG
AAGACCGATT TACGCTTTGA AAAATCGGGT CGCGGCACCC TGTATCTACC CTATGCGACT
TCGCTGCGGA TGAGCGATCT GGGTTACACC AATAAAGAGC AGGAAGATCT TAACATTAGC
TATAACTCCC TGCCCGAGTA TCTGGCTGGG GTGAGAGCCG CGATTAAGAT GCCATCGGCC
AACTTTGCCA ATATCGGCGT GAAAGTGGAT GGTGAATATC GCCAGCTCAA TGCTAATGTG
CTGCAAATTG AAAACGAATT TTACTCGCCT ATCCGCGCTA AGCGCGTCAC CAAAAGTGGT
GAGAAGCCCT CCGAAGCCCT TGCACGTGCA GGGGTTGAGT ATATTGAGGT GCGTGCATTA
GATGTGAACC CCTTCAGCCC GATTGGGATT GAAGAGAACC AAGTGCGTTT TCTCGACTTG
TTCTTACTCT ATTGCTTATT AACCGAGTCG CCTAAGTCCG ATGCGGCAGA AGAAGCCCGT
TTAAGTGCTA ACTTAAAATC TGTTGTGCTT GAAGGCCGTA AGCCTGGGCT CGAGTTATTA
ACCGAGACAG GAACGCGTTC ACTGCAAACG TGGCTTTTGG ATCTGTTTGA GCATTTGGAT
TCATTGGCTA AGTTACTCGA TGGCGATAAA CAGGAGTACC AAGCGGCCTT AGCCCATTGG
CGTGAAGCCG TGAATGACCC ACAAAAGACC TTGTCTGGGC AAGTCATTCA GCAATTAATC
ACCAAAGGCC AAGACCATGG ACAATGGGTG ATGTCACTGG CGCAGCAATA TCACCAATAT
TTTATGGATT ACCCCTTATC GGCCGAGGTT GTCAGCGATT ATCAAGCCGA GGCGCAAGCA
TCGCTTAATA AGCAAGCGGA CATCGAAGCG GTGCAAAGTG CAGTATCCTT TGATGATTAT
CTGACGGACT ATTTCGGGAC TTCATCCTAA
|
|---|
| Protein sequence | MKDKPQNKGL TVNLVAIANH QSEKRKLKPF NELVQHFSDA QGRAALLGML RGIEREALRI
DESGYLALDG HPLELGSALT HSRITTDYSE ALLEFITPVN NQVGPLLQGL TETHAFSVRH
LHGQRLWPVS MPCYVKDEQN IPVARYGSSN TGKMKTLYRK GLTYRYGALM QIISGVHFNF
SVSQELWQSL YELSDKSVSF EDFISESYFG LIRNYRRLVW VLPYLFGASP ALCSSFIKGQ
KTDLRFEKSG RGTLYLPYAT SLRMSDLGYT NKEQEDLNIS YNSLPEYLAG VRAAIKMPSA
NFANIGVKVD GEYRQLNANV LQIENEFYSP IRAKRVTKSG EKPSEALARA GVEYIEVRAL
DVNPFSPIGI EENQVRFLDL FLLYCLLTES PKSDAAEEAR LSANLKSVVL EGRKPGLELL
TETGTRSLQT WLLDLFEHLD SLAKLLDGDK QEYQAALAHW REAVNDPQKT LSGQVIQQLI
TKGQDHGQWV MSLAQQYHQY FMDYPLSAEV VSDYQAEAQA SLNKQADIEA VQSAVSFDDY
LTDYFGTSS
|
|---|
| |