| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2922 |
|---|
| Symbol | |
|---|
| ID | 4253493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3489992 |
|---|
| End bp | 3491299 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638119558 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_735050 |
|---|
| Protein GI | 113971257 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA AACCTCCCGT TCATAGTGAA CAATATCCCC AGTCTTATTA TGTTGATACT
GCAAAAGAAA TTTACGCTCA TCCCCAACTT GAGGGTAAGG TAAGCACCGA CGTTTGCATT
ATCGGCGGTG GTTTCAGTGG TATTAACACA GCTATCGAAC TGCGGCAAAA AGGCCTAAAC
GTAGTGCTAC TCGAGGCCAA GCGCATAGGC TGGGGCGCCT CAGGGCGTAA TGGTGGCGAG
CTGATCCGCG GTATTGGCCA TGATCCTGCG CAATTTATCA ATGAGATAGG TCAAGAAGGC
GTGAGCGCCA TTGAGCAAAT GGGGTTTGAA GCGGTAGAGA TCGTGCGAAA TCGGATCCAG
ACCCATCACA TCGATTGCGA TTTACAAATG GGCTATTGCG ATCTTGCAGT TAAACCTCGG
CATATGCTCG AACTAGAACA AGAGTTCGAC CATCTTAAAC ACCTTGGATA TCAGCATGAA
ATCAAACTAT TAACTCAGTC TCAGCTCGGA GAAGTTATCG GCTCAGACTT TTACCAAGGC
GCCCTAGTCG ACATGGGCAG CGGTCATTTA CATCCACTGA ATTTGGCCTT GGGCGAGGCT
CGTGTTGCCC GAGAATTGGG CGCTCAATTA TTTGAATACA GCGCCGCAGA AAAGATTATT
CCTGGGGATA AACCGCGAGT ATTAACGGCA AAAGGCGAAG TGACTTGCCA ATATGTGGTG
CTCGCTGGCA ACGCTTATAT TGGCCATAAA TTGAATAGCT ACATCGGCGG TAAAGTACTG
CCCGCGGGGA GTTACTTGCT TGCAACCGAG CCACTGACAG AAGCGCAATG CCAAAGCATT
ATCCCGCAAA ATATGGCCTT TGCAGACATG CGAATCGCCT TAGATTACTT CCACTTATCG
GCGGATAGAC GCTTGCTCTT CGGCGGACTT TGTACTTATT CAGGCAAAGA TCCTAAGGAT
ATTGAAGCAG CGCTCAGACC GAACCTTGAG AAGGTATTCC CACAGTTAAA AGGCGTACGC
ATCGATTACG AATGGGGCGG CATGATAGGC ATTGGCGCCA ACCGTATGCC CCAAATCGGT
CGCCTCCCCG ATGCGAGTAA TATTTTTTAC GCCCAAGCCT ACGCAGGCCA CGGCGTCAAT
GCCACCCATA TGGCCGCCAA ACTGCTCGCC GAAGCCATAT GTCAGCAGGC GGGATATTTT
GATGTGTTCG CTAAAATCAA GCATATGACC TTCCCCGGCG GCCCCACATT CCGCTCGCCC
ATGCTGGCAG CGGGCATGCT ATACCACAGG TTTAAAGACT TATTCTGA
|
|---|
| Protein sequence | MTTKPPVHSE QYPQSYYVDT AKEIYAHPQL EGKVSTDVCI IGGGFSGINT AIELRQKGLN
VVLLEAKRIG WGASGRNGGE LIRGIGHDPA QFINEIGQEG VSAIEQMGFE AVEIVRNRIQ
THHIDCDLQM GYCDLAVKPR HMLELEQEFD HLKHLGYQHE IKLLTQSQLG EVIGSDFYQG
ALVDMGSGHL HPLNLALGEA RVARELGAQL FEYSAAEKII PGDKPRVLTA KGEVTCQYVV
LAGNAYIGHK LNSYIGGKVL PAGSYLLATE PLTEAQCQSI IPQNMAFADM RIALDYFHLS
ADRRLLFGGL CTYSGKDPKD IEAALRPNLE KVFPQLKGVR IDYEWGGMIG IGANRMPQIG
RLPDASNIFY AQAYAGHGVN ATHMAAKLLA EAICQQAGYF DVFAKIKHMT FPGGPTFRSP
MLAAGMLYHR FKDLF
|
|---|
| |