Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2873 |
Symbol | gltD |
ID | 4253444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3428599 |
End bp | 3430005 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638119508 |
Product | glutamate synthase subunit beta |
Protein accession | YP_735001 |
Protein GI | 113971208 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0110656 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAACG ATTTTCAATT TATTGAAGTG GGTCGTAAAG ACCCAACTAA ACACCCTGCA GCAAAGCGTT CGACTCAGTT TATTGAGATT TATCAGCCCT TTGCTCAAGC TCAGGTGACT GAACAGGCGG ACCGTTGTCT GGATTGCGGT AACCCTTATT GTGAGTGGAA ATGCCCGCTG CACAACTATA TTCCCAACTG GCTAAAGCTG GCACAGCAGG GCCGGATCAT GGAGGCGGCG GACTTAGTCC ATGAAACCAA TACCCTGCCC GAGATCTGCG GCCGCGTCTG TCCACAGGAC AGACTCTGTG AAGGGGCTTG TACCCTAAAC GCCGACTTTG GCGCCGTGAC TATCGGTAAT GTCGAGAAAT ACATTACCGA TACCGCCATC GCCCAAGGCT GGCGTCCGGA TATGAGCAAG GTCACGCCGC GCAAGGAAAA GGTCGCGATT GTGGGCGCTG GCCCTGCAGG TTTAGGCTGC GCCGATATTC TTGCCCGTAA TGGGGTTAAG GCTGTGGTGT TTGATAAGTA TCCCCAGATT GGTGGCCTGC TGACCTACGG TATTCCCTCC TTTAAACTGG ATAAAGCCGT GATGGCAACT CGCCGCACTG TGTTAGAAGG CATGGGCATC GAGTTCAAGC TGGGCGTCAC TGTGGGTAAG GACGTCGCCT TTAACCAGCT GCTTGAGGAA TACGATGCTG TCTTCCTCGG TATGGGGACC TACACCGCCA TGAAAGCGGG CCTTGAGGGC GAAGACGCCC AAGGCGTGTA CCAAGCCCTG CCCTACTTGA TTGGCAATAC CCATCACCTG ATGGGCAGCA GTAATCCAGA CACCCCTTAC CTCAACCTTG CCGGTAAGCG CGTCGTGGTA CTCGGTGGTG GTGATACCGC CATGGACTGT GTTCGCACCG CTGTTCGCCA AGGAGCCAGC AGTGTGATTT GTGCCTATCG CCGTGATGAA GCCAACATGC CGGGTTCACG CCGCGAAGTG CAAAACGCCC GTGAAGAGGG AGTGAACTTC CTGTTTAACC GTCAACCCGT GGCGATTAAA ACCCAGGACG GTAAAGTGGT GGGTGTGGAA TGCGTTGAAA CCCAAATGGG TAAAGCCGAT GCGAGTGGCC GTCAACGTGC CGAAGCGATT GAAGGCAGTG AGCAGTTACT CGATGCCGAT GCGGTGATTA TCGCCTTCGG TTTCCAACCT AGCCCTGCGC CTTGGTTTGC CGATTACGGC ATTGAACTCG ACCAATGGGG CCGAGTGAAA GCCAGTAAAC AGGCCGATAA CCCATTCCAA ACTACCAATC CGAAGGTATT TGCTGGCGGG GATATGGTCC GTGGCTCGGA TCTGGTTGTG ACCGCAATTG CCGAAGGACG TGATGCCGCG CAAGGCATTC TTAACTACTT AGATTAA
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Protein sequence | MSNDFQFIEV GRKDPTKHPA AKRSTQFIEI YQPFAQAQVT EQADRCLDCG NPYCEWKCPL HNYIPNWLKL AQQGRIMEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN ADFGAVTIGN VEKYITDTAI AQGWRPDMSK VTPRKEKVAI VGAGPAGLGC ADILARNGVK AVVFDKYPQI GGLLTYGIPS FKLDKAVMAT RRTVLEGMGI EFKLGVTVGK DVAFNQLLEE YDAVFLGMGT YTAMKAGLEG EDAQGVYQAL PYLIGNTHHL MGSSNPDTPY LNLAGKRVVV LGGGDTAMDC VRTAVRQGAS SVICAYRRDE ANMPGSRREV QNAREEGVNF LFNRQPVAIK TQDGKVVGVE CVETQMGKAD ASGRQRAEAI EGSEQLLDAD AVIIAFGFQP SPAPWFADYG IELDQWGRVK ASKQADNPFQ TTNPKVFAGG DMVRGSDLVV TAIAEGRDAA QGILNYLD
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