Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2837 |
Symbol | rimM |
ID | 4253408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3392123 |
End bp | 3392653 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638119472 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_734965 |
Protein GI | 113971172 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000499984 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGTA ACCAACAGCC AGTCGTACTG GGGAAATTAG GCTCCTGTCA TGGCATTAAA GGTTGGCTGA AAATCACCGC CTATACCGAT TCTGTTGAAG GGATCTTTGA CTATTCACCT TGGCTTATTA AAGAAAATGG TGAATGGCGT GAAGTAAAAG TCATTCAGTG GCGTTACCAA GGCAAAGCGG TTGTCGCCGA GCTTGAAGGT GTCACCACGC GGGAGCGAGC ACAAATGCTC ACCAATTGCG AAATTGGGAT CCTGCCAGAG CAGATGAACG CATTGCCAGA AGACGAGTTC TATTGGCGTG ACCTCATCGG TTGTGAAGTG ATTAATACTA ATGGCTATAA CATGGGTGTT GTCGATCAAA TCGTGGAAAC CGGTTCGAAC GATGTGCTCT TAGTGAAAGC CAACGCGAAA GATAGCTTCG GCAAAGTGGA GCGTATGCTT CCCTTTGTTC CAGGACAATT CATCTTAAAG GTGGATATCC AAGGTAAACA GATTTTAGTG GATTGGGATC CTGACTTTTA A
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Protein sequence | MSSNQQPVVL GKLGSCHGIK GWLKITAYTD SVEGIFDYSP WLIKENGEWR EVKVIQWRYQ GKAVVAELEG VTTRERAQML TNCEIGILPE QMNALPEDEF YWRDLIGCEV INTNGYNMGV VDQIVETGSN DVLLVKANAK DSFGKVERML PFVPGQFILK VDIQGKQILV DWDPDF
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