Gene Shewmr4_2837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2837 
SymbolrimM 
ID4253408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3392123 
End bp3392653 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content46% 
IMG OID638119472 
Product16S rRNA-processing protein RimM 
Protein accessionYP_734965 
Protein GI113971172 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000499984 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGTA ACCAACAGCC AGTCGTACTG GGGAAATTAG GCTCCTGTCA TGGCATTAAA 
GGTTGGCTGA AAATCACCGC CTATACCGAT TCTGTTGAAG GGATCTTTGA CTATTCACCT
TGGCTTATTA AAGAAAATGG TGAATGGCGT GAAGTAAAAG TCATTCAGTG GCGTTACCAA
GGCAAAGCGG TTGTCGCCGA GCTTGAAGGT GTCACCACGC GGGAGCGAGC ACAAATGCTC
ACCAATTGCG AAATTGGGAT CCTGCCAGAG CAGATGAACG CATTGCCAGA AGACGAGTTC
TATTGGCGTG ACCTCATCGG TTGTGAAGTG ATTAATACTA ATGGCTATAA CATGGGTGTT
GTCGATCAAA TCGTGGAAAC CGGTTCGAAC GATGTGCTCT TAGTGAAAGC CAACGCGAAA
GATAGCTTCG GCAAAGTGGA GCGTATGCTT CCCTTTGTTC CAGGACAATT CATCTTAAAG
GTGGATATCC AAGGTAAACA GATTTTAGTG GATTGGGATC CTGACTTTTA A
 
Protein sequence
MSSNQQPVVL GKLGSCHGIK GWLKITAYTD SVEGIFDYSP WLIKENGEWR EVKVIQWRYQ 
GKAVVAELEG VTTRERAQML TNCEIGILPE QMNALPEDEF YWRDLIGCEV INTNGYNMGV
VDQIVETGSN DVLLVKANAK DSFGKVERML PFVPGQFILK VDIQGKQILV DWDPDF