Gene Shewmr4_2710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2710 
Symbol 
ID4253281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3232121 
End bp3233065 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content43% 
IMG OID638119345 
Productporin 
Protein accessionYP_734838 
Protein GI113971045 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.6835e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.68324e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAACG TTTTTTGTAA AACTCTACTT GCTTCTGCGC TAGCTTCTGC AACTCTGGCT 
TCTGCTTATG CCGCTGAGCC ACTGACTGTT TATGGTAAGT TGAACGTTAC CGCTCAATCA
AATGATGAGA AAGGTGATTC TACAACAACT ATTCAAAGTA ATGCTTCTCG TTTTGGTGTG
AAGGGTGATT TCGAACTGTC TAGCTCGCTG GAAGCGTTCT ACACAGTAGA GTACGAAGTT
GATACTGGCG CTGCAACAAG CGACAACTTC AAAGCCCGTA ACCAATTCGT TGGTTTAAAA
GGTGCATTTG GTTCTTTCTC TGTTGGTCGT AACGACACTC TGTTAAAGAT CTCTCAAGGT
AACGTTGACC AGTTCAACGA TTTATCAGGT GACTTAAAGA GCCTGTTCAA AGGTGAAAAC
CGTTTAGGTC AAACTGCAAC TTACCTGTCA CCTTCAATCG GTGGTTTCGT ATTCGGTGCA
ACTTATGCTG CTGAAGGCGA TGCTGACCAA CAAGCTCAAG ACGGTTTCAG CTTAGCCGCT
ATGTACGGTG ACGCTAAACT GAAAAAATCA CCTTTCTACG CCGCTATCGC TTACGATTCT
GACGTAAAAG GTTATGAAAT CCTGCGTGCA TCGGTACAAG GTAAAATCGC TGATTTAACC
TTAGGTGGTA TGTATCAACA ACAGGAACAA ACCTACAAAA ACGCTTTACC TGTTAACACT
GACAGCGTGA ACGGTTACCT GTTTAGCGCC GCTTATGATA TCAATGCTGT GACGTTAAAA
GCCCAATACC AAGACATGGA AGACTTAGGT GATTCATGGT CAGTGGGTGC GGACTACAGC
TTAGGTAAGC CTACGAAAGT GTTTGCTTTC TATACTAACC GTTCTATGGA AGCGTCTAAC
GACGATGACA AATACATAGC TGTAGGCTTA GAACACAAGT TCTAA
 
Protein sequence
MMNVFCKTLL ASALASATLA SAYAAEPLTV YGKLNVTAQS NDEKGDSTTT IQSNASRFGV 
KGDFELSSSL EAFYTVEYEV DTGAATSDNF KARNQFVGLK GAFGSFSVGR NDTLLKISQG
NVDQFNDLSG DLKSLFKGEN RLGQTATYLS PSIGGFVFGA TYAAEGDADQ QAQDGFSLAA
MYGDAKLKKS PFYAAIAYDS DVKGYEILRA SVQGKIADLT LGGMYQQQEQ TYKNALPVNT
DSVNGYLFSA AYDINAVTLK AQYQDMEDLG DSWSVGADYS LGKPTKVFAF YTNRSMEASN
DDDKYIAVGL EHKF