| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2644 |
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| Symbol | dapD |
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| ID | 4253215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3150276 |
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| End bp | 3151100 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119279 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_734772 |
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| Protein GI | 113970979 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.936555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCC GCATTTGAAG CGCGTGCCGA CATCACACCA
AGCACTGTTG ACGCAAGCGT GCGTAACGAT GTGCAAAATG TCATCAATAT GCTCGATAAA
GGTGAACTGC GCGTCGCCGA GAAAATCGAT GGCCAATGGC ATGTACATCA ATGGTTGAAG
AAGGCGGTAT TACTGTCATT CCGTATTTTC GATAACGCCG TTATCGATGG TGCCGAAACC
AAATATTTCG ATAAAGTACC GTTAAAGTTC GCCGAGTATG ACGAGGCCCG CTTTAAAGCC
GAAGCTATCC GTGTGGTGCC ATCGGCAACC GTACGTAAAG GCTCTTTTAT CGGTAAAAAC
ACTGTGTTAA TGCCTTCTTA CGTGAACCTT GGCGCCTACG TTGACGAAGG CACTATGGTT
GACACTTGGG CAACCGTTGG CTCATGTGCG CAAATCGGTA AGAACGTGCA CTTATCTGGT
GGTGTGGGCA TCGGTGGCGT ACTCGAGCCG CTGCAAGCGG GTCCGACCAT TATTGAAGAT
AACTGCTTTA TCGGCGCACG CTCTGAGATT GTCGAAGGCG TTGTCGTTGA AGAAGGCTCT
GTGATTTCAA TGGGCGTTTA TATCGGCCAA AGTACCCGTA TTTATGACCG TGAAACGGGC
GAAATCCACT ATGGTCGCGT TCCAGCTGGC TCTGTTGTGG TATCGGGTAA CCTGCCATCG
GCTTGCGGTA AATACAGCCT ATACGCTGCA ATTATCGTTA AGAAAGTGGA TGCGAAAACC
CGCGGTAAAG TGGGGATCAA CGAACTGTTA CGTATCGTCG ATTAA
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| Protein sequence | MEALRQRIEA AFEARADITP STVDASVRND VQNVINMLDK GELRVAEKID GQWHVHQWLK
KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGNLPS
ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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