Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2633 |
Symbol | |
ID | 4253204 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3136495 |
End bp | 3138975 |
Gene Length | 2481 bp |
Protein Length | 826 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638119268 |
Product | surface antigen (D15) |
Protein accession | YP_734761 |
Protein GI | 113970968 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000445373 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.203506 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTGA ATAAACTTTT TGCCTCGATG TTATTCGTCG GTGCGTCGTT TTCAGGGACT GTGTTGGCGG ATACTTTCCA ACCCTTTGAA GTGACCGACA TCCAAGTTGA AGGTTTGCAG CGAGTCGCAC TGGGTGCTGC CTTGTTAAGC TTACCAGTGA AAGTGGGTGA CACTGTTGAC CAGTTAAAGA TTCAGCAAGC CATTAAAAGC CTGTATGCAT CGACTAACTT TGAAAATATC ACTGTTAGTC GTGATGGTGG CGTATTGATT GTCAAAGTCA CTGAGCGGCC AACGATCAGC GCCGTGACTT TTGAAGGCAA CAAAGACATT AAAGATGAGC AGTTACAGGA AAGTCTGGAT GGCTCAGGCG TGAAAGTCGG CGAGTCCTTA GACCGTACTA TGCTGACAGG CATCGAGAAG GGATTACAAG ACTTCTACTA CGGTGTAGGT AAATACGGTG CGAAAGTTGA AGCGCAGGTG ATTAACTTAC CCCGTAACCG TGTCGAATTA AAATTTAAGT TTACTGAAGG TTTAGCTGCT GAAATTCGCC AAATTAACGT GGTTGGCAAC AAAGAGTTCA CCGATGCTGA GCTTATCGGC ATGTTAGAAC TCAAAGACTA CGTGGCTTGG TGGGATCTGT TCGGTGAGCG TCGCTATCAG AAGCAAAAGC TGCAAGCCGA TCTTGAAACC ATTAAAACCT ATTATCACAA CAAGGGTTAT ATCCGCTTTG AAGTCACCTC GACGCAAGTG GCGATGACGC CTGACCGTAA AGGTTTGTAT ATCACCATCA ACGTCAACGA AGGTGAGAAG TACAAGGTTA AAGACGTTAA CCTCACCGGC GACTTAATGG GCCGCGAAGA GTTAATGAGA TCGATTCTGC CAATTAAGGC GGGCGATATG TACAACGGCG GTGATGTGAC CTTCACCGAA GAGATGTACA GTAAATATTT AGGCCGTTTC GGTTACGCTT ACCCTGAAGT GAAAACCTAC CCTGAAATTG ATGATAAGAC TAAGGAAGTC ACCTTAAACA TCAATATCAA ACCGGGTAAA CGTGTGTATG TGCGTTCGGT TAACTTCACC GGTAACACTG TCACTAAAGA TGAAGTGATG CGCCGCGAAC TGCGTCAGAT GGAAGGTGCT TGGTTAAACT CGGCGCAGGT TGAGCAATCT AAAGCTCGTC TAAACCGTTT AGGCTTCTTC GAGACCGTTG ATACCGAAAC CATTCAAGTG CCAGGTACCG ACGATTTAGT CGATGTGGCC GTGAAGGTTA AAGAGCAGCC ATCGGGCTCA TTTAACGCCG GTGTGGGTTA TGGTACTGAA TCGGGCTTAA GTCTGCAGTT TGGTGTGCAG CAAAATAACT TCCTCGGTAC GGGTAACCAA GCGGGCGTGA GTTTAAGCAC TAACAAGTAC TCTAAGAACG TTAACTTATC TTACACCGAT CCATATTGGA CCAAAGATGG TGTGAGCTTA GGTGGTAGCG TTTATTGGAA CGAGTTCGAT GCGAATGAAG CGAACCTTGA ACGCTATAAG AACAGTTCCT ACGGCGTGGC ATTGAATTCA GGTTTCCCGA TTAACGAATA TAACCGTATC AACGGTGGTA TTGGCTATCG TCATAACACG ATTTCAGAAA TCTCTGCCTA CGAGCAGGCG CTGCGTTTCT ACAATATCTA CCGTGACGAT GATCCAAATG CCGATTTAAG CTTCGATAAC TTTGAGCTGA GCTTAGGTTG GTACCGCAGC ACGCTAAACC GTGGCACCTT CCCAACGGAC GGTTCGTCAC AGCGTTTAAG CGGTAAGATG ACAGTACCGG GCTCGGATCT GCAGTACTTT AAGACTGACT TCGATACTAA CTATTATTTC CCCATCAACC GCAGCCACAG TTTTGTGCTA TTAGCGCGCG GTCGTTTAGG TTATGGCAAC GGCTATGGTC AATTCAACGA TAATGACCAA ATCCTGCCAT TCTGGGAAAA CTATTACTCG GGCGGGAGTA CCTCACTGCG TGGCTTTAAG TCTAACTCGG TCGGTCCACG TTCATTCTAC CTCTTCCGTG GTAGTGAGCC TTGTGCGCCG GATCCATCGG GTGACGGTTG TAGCTTACCG GGCGATCCAA ACAGTATTCA GGTCAGTTCA GGTCGTTCTA TCGGTGGTAA CGCGATTGCA ACTGCCAGTA TGGAGTTGAT TGTACCAACG CCATTCTTGG ATGAGGCTTA CGCTAACTCT GTACGTACCA GTTTCTTCGT CGATGCGGGT AACGTGTGGG ATACTGAGTT TGATTTTGCT AAGTATCAAA CCCTGCCTGC GGAAGAGTTT GATAAGTTGC AGGACTACAG TGATCCTGGC CGTATCAGAG CGTCTTGGGG GTTAAGCTTA CAGTGGCTGT CTCCTATGGG CCCAATGGTA TTCAGCTTGG CATGGCCGAT TAAAGAATAC GAAGGCGATC AAACAGAGAT CTTCTCGTTC AATATTGGCA AAACTTTTTA A
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Protein sequence | MRLNKLFASM LFVGASFSGT VLADTFQPFE VTDIQVEGLQ RVALGAALLS LPVKVGDTVD QLKIQQAIKS LYASTNFENI TVSRDGGVLI VKVTERPTIS AVTFEGNKDI KDEQLQESLD GSGVKVGESL DRTMLTGIEK GLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFTEGLAA EIRQINVVGN KEFTDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYHNKGY IRFEVTSTQV AMTPDRKGLY ITINVNEGEK YKVKDVNLTG DLMGREELMR SILPIKAGDM YNGGDVTFTE EMYSKYLGRF GYAYPEVKTY PEIDDKTKEV TLNINIKPGK RVYVRSVNFT GNTVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGFF ETVDTETIQV PGTDDLVDVA VKVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QNNFLGTGNQ AGVSLSTNKY SKNVNLSYTD PYWTKDGVSL GGSVYWNEFD ANEANLERYK NSSYGVALNS GFPINEYNRI NGGIGYRHNT ISEISAYEQA LRFYNIYRDD DPNADLSFDN FELSLGWYRS TLNRGTFPTD GSSQRLSGKM TVPGSDLQYF KTDFDTNYYF PINRSHSFVL LARGRLGYGN GYGQFNDNDQ ILPFWENYYS GGSTSLRGFK SNSVGPRSFY LFRGSEPCAP DPSGDGCSLP GDPNSIQVSS GRSIGGNAIA TASMELIVPT PFLDEAYANS VRTSFFVDAG NVWDTEFDFA KYQTLPAEEF DKLQDYSDPG RIRASWGLSL QWLSPMGPMV FSLAWPIKEY EGDQTEIFSF NIGKTF
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