Gene Shewmr4_2598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2598 
Symbol 
ID4253169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3094659 
End bp3095600 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content48% 
IMG OID638119233 
Producthomoserine O-succinyltransferase 
Protein accessionYP_734726 
Protein GI113970933 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1897] Homoserine trans-succinylase 
TIGRFAM ID[TIGR01001] homoserine O-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00675576 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000129585 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCAGTTA AAATTCCAGA TCATCTGCCT GCTGCAGGGA TTTTAGAATC TGAAAATATT 
TTCGTAATGT CCGAGACCCG GGCTGCCAAT CAGGATATCA GACCGATGAA GGTGCTGATC
CTGAATCTGA TGCCCAATAA AATCGAGACA GAAACCCAGC TTCTACGCCT ATTAGGTAAC
ACGCCTTTGC AGGTGGATGT GGATTTACTG CGTATTCACG ATAAAGAGTC AAAGCACACC
TCAATCGATC ATATGAACAC CTTCTACCGT GATTTTGAGG ACGTGCGTCA TAAAAACTAC
GACGGCCTGA TCATCACGGG CGCGCCCCTT GGGCAAATCG ATTTCGAAGA GGTCACTTAC
TGGGATCATA TCCGCGAGAT TATCGATTGG TCACAGCAAC ATGTGACGTC GGTATTATTC
CTCTGCTGGG CTGCTCATGC CGGGCTTTAC CATCTCTACG GTTTGAATCG GAAAATCCTG
CAGCAAAAGC GTTCAGGGGT GTTTGTGCAT CGCCGTACTT GCCAACATTT CCCGCTGCTG
CGCGGATTCG ATGATGAGTT CTTTGCGCCG CATTCCCGCT TTGCTGAGAT GGATATCGAG
GAACTTAAAC AACACCCTGA GCTACAAGTG CTGGCAGAAT CCGATGAGGC AGGGGCCTAC
TTAGTCCTCA GTCGCAATAA TCGCAACCTG TTTGTGATGG GTCACCCCGA ATACCAAAAA
TCTACCTTAA ACGATGAATA TCATCGGGAT TTGGCGCAGG GATTAAACCC AAATGTGCCG
CAAAACTATT ATCGTAATGA CGACCCCCAG GCCGATGCTA TTGCCCGTTG GCACAGCCAT
GGCAGTTTGT TAGTCAGCAA CTGGCTCAAC TATTATGTGT ACCAATTAAC GCCTTACGAT
CTGAGTGATA TGACAGCGAT GACGCCGTGG GAGTCGCAAT AG
 
Protein sequence
MPVKIPDHLP AAGILESENI FVMSETRAAN QDIRPMKVLI LNLMPNKIET ETQLLRLLGN 
TPLQVDVDLL RIHDKESKHT SIDHMNTFYR DFEDVRHKNY DGLIITGAPL GQIDFEEVTY
WDHIREIIDW SQQHVTSVLF LCWAAHAGLY HLYGLNRKIL QQKRSGVFVH RRTCQHFPLL
RGFDDEFFAP HSRFAEMDIE ELKQHPELQV LAESDEAGAY LVLSRNNRNL FVMGHPEYQK
STLNDEYHRD LAQGLNPNVP QNYYRNDDPQ ADAIARWHSH GSLLVSNWLN YYVYQLTPYD
LSDMTAMTPW ESQ