| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2580 |
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| Symbol | |
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| ID | 4253151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3069303 |
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| End bp | 3072494 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119215 |
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| Product | lysine decarboxylase transcriptional regulator, CadC |
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| Protein accession | YP_734708 |
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| Protein GI | 113970915 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA GCACATTTTT TTTGGGTGAA TGGCAAGTTA ATCCCAGCGC CAACAGCCTG
CTTCTGGGTA AACAAGTTAA ACAGCTTGAG CCTAAGGCGA TGGATGTGTT GTTATTTCTC
TGCCAAAACG CCGGTGAAGT GGTCAGCAGC GACGAGATTG TTAGCCATTG CTGGCCGGGA
GTCGACACAG GTGATAATCC ACTGCACAAA ATTATCAACC AGTTACGTCG CGCACTTGGC
GATAGTGCCA CCGAATCCCG TTACATTGAG ACCATTCGCA AACGCGGTTA TCGCACCTTA
GCCGAGGTGC GTTTTCCCGT CGGCCATGAG GCCAGCGCCA CGCCACAAAC CTGGCAAGGT
GGCTCACCGT TTCCGGGCTT GCAAGCCTAC AGCGCCAACT ATGCCGACGT GTTCTTCGGC
CGCAGCGAAC AAATTAGCAC GCTGCTGAAT CGCATTAGCC AACAAATCCA ATTTGGCCGC
GCTTTCTGCT TAATTTTAGG CCCCAGTGGT AGCGGTAAAT CCTCCTTAAT TAATGCTGGT
GTATTGCCTA ACCTCATGGC CGCCAATGGC TTTAATGGCG TCGGCGTTGT GGCCTATAGC
AGCCTCGATT TTGCCGATGT CAGCAAGGGA CAACTGCTTA CCGATCTAGC CAGTACCATG
CTCGACTGGG AACTAAACGA CACCCCAGTC TTTGAGGGAA TGAGCGCCGA TACGCTTGCC
GCCAAGCTTG AGCAAGATCC GCAAAGCATT ATCGATATAT GCAAACAAAG TCTTAAAAAT
CAGACCTATG CTACGCCACG CTTTGCCTTA TTTATCGACC GATTAGAAGT CTTATTATCA
TCGCCGCTGT TTAGCGATGC CGAGCGCAGC GCCTTTATCG AGCTATTAGA GCGCCTTGCC
ACTTCCCATG CGGTGTTGAT TTTAAGTGCC TGTCGCAATG ACTTTTATCC GTTGCTGGTC
AATTACCCCA GCCTGATGGC AGGCAAAGCG CGCGGCGCCC ATTTCGACTT AGCACCGCCC
ACTCGCACCG AGCTGCTGCA GATGATCCGC CTGCCAGCCG TTGCCGCCAA TTTATCTTGG
GAAATCGATA GCGACACCGC CATGCCGCTC GATGAAATGC TCTGTAGCGA TGCCGCCAGC
AACCCTGATG CGCTGCCTAT GTTGCAATAC ACCTTGCAGG CGCTGTATTT ACAACGCAGT
GACGATGACA AACTATTGGT CTCTGTGTAT CGCACCTTGG GCGGTATCGA AGGCGCTATA
GGTAAAAATG CCGAGCAGGC CATCTCCCAT TTAACCGAGG CCGAAAAAGC CAGTCTGCCG
CGGATTTTGT CCCTGTTAGT CACCCTGCGT GAGGATGAAA AATCCATCAC CAGCCGCACC
GCCCGCTGGT CACAGTTGCA AAGCGCGGCC GAAACCGCCC TAGTGCAAGC CATGGTCGAT
AGCCGCTTAT TTGTGTCCCA TCTGCAAAAT GGTGAACCCT GTTTTAGCAT CGCCCACGAA
GCCCTGCTGC GCCGCTGGCC AAGGGCGACG GCGTGGATCA GCGAACATAA CGACAGCCTT
AGCATTAAGA GCCGACTACA GCATTTATCC CAGCGCTGGC TAAGCGAAGA CAAACACAGC
GCCTACTTAT TGGCCGAGGG TAAACCCTTA AAAGAGGCTC AAAGCCTTAA GCAAAACCCC
TTGTTTGACT TAGACGAGCG GGAAACCGAC TTTATTGCCG CCTCCAGCAA ACGCGCCACT
ATGCTGCGTT GGACGAGGCG CATCACAGTC GCCCTGCTGT GCGTACTCAC CTTAACCTCA
GTCATTATGA GCGTTCGCAG TATCGAAGCC GAGAAGCTGG CCCAGCAAAA ACGCCTCGCC
GCCGAAGATC TGCTCGGGTT TATGGTGGGT GACTTCGCCG ATAAGATGCG CGGCATCGGC
CGGATGGACT TACTCGACGG GATCAGCAAT AAGGCATTGG AATATTTCAC GGATTTCTCC
AGCCAAGACG ATGAGAAGTA CTTAAGTTTC GACGCCCGCT TCCAGCATGG GCAGACCTTA
GAGGCCATGG GCGAAGTCGC CTATTCACGC AATAAAATCG ATGAAGCCCG CAGCGCCCTA
CTCGCCGCGC AGGAAAAAAT GCTGCCGCTG CTCGAATTGC AGCCAGACAA CTTAGCCCTG
CTAAAAACCT TAGGTGCCAA TGCCTTTTGG TTGGGTCAGC TTAAATATGA TGTGAGTGAT
TGGGCTGCTG CACGTCCTTT TTGGGAACAA TATTTACTAT ACAGTCAAAC AATGTATGTC
ATTGCGCCAG AAGATAAAGA TGCGCTAATG GAGCTGTCCT ATGCCCATAA CTCGCTGGGT
TCTGTATCAA TGAACCAGCA AGAATTTGCT AAAGCACAGC AAGATTTTGA AGAATCATTA
CAATTAAAAT TATTGGCGCT CAAAAATGTC CCTGAAGATA GCCAACTGAT TGCCGATGTT
GCCGATACAC GTTCTTGGTT AGCGAGTGCA TTAACCTCCC TTGGCAATCT CGATACTGCA
ATCAAGCTCC AAGAAGAAAC TCAAAATCAA TTACTCAACT ATCTAAAACC AAATGATGCC
TATATGCGAG ATAGATTAGC TAGTACTCTA GGCAGATTAG CTGAATTACT TGAGTACAAA
GGCAATTTTG AATCTGCACT TGAAAAATTG TTACAGGCCC AAAACTTCAC AGAAAAATCT
CTGCTTTTAG ACGCTGATAA TGAAGTCTGG AAAAGAGATT TGTTCTATAT TCGGACAAGA
ATATTATTTT TAAATAGTTT TATTAACAAT CCAAGAGTAA AAGAGACTTC TCAGTCACTT
TTAGATTTTT TTGACTCCAA CTTTAAATCA ATGGACAAAC AAAGAAGAGA TTACCTATAC
GCCAACGCAT TATTCTCTGT TGCCACATAT GAAATTAAAA ATAATTCACC TCTCGGCTAT
GACAGCCTAA AAAAATCAAA TACTATCTTC TCTGAGCTAG TAAAAAATGC CCCACAAGAA
AGAAAATACA TCATTGGTTT CGCAAGAACT AATATGGCAA TAGTTGAAGC TAGGATGACA
GTAGACAACA AAGAAGAGTA TTTAACACTT TGCAAAGAGA CCCAAAAAAT ATTGCAACCA
TTAATAGAAA AAGATAAGAA TCCCGAAATA ACCATGCCTT ACTTAGACTC AAAGAACTGT
CAAGAAAGAT AA
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| Protein sequence | MSDSTFFLGE WQVNPSANSL LLGKQVKQLE PKAMDVLLFL CQNAGEVVSS DEIVSHCWPG
VDTGDNPLHK IINQLRRALG DSATESRYIE TIRKRGYRTL AEVRFPVGHE ASATPQTWQG
GSPFPGLQAY SANYADVFFG RSEQISTLLN RISQQIQFGR AFCLILGPSG SGKSSLINAG
VLPNLMAANG FNGVGVVAYS SLDFADVSKG QLLTDLASTM LDWELNDTPV FEGMSADTLA
AKLEQDPQSI IDICKQSLKN QTYATPRFAL FIDRLEVLLS SPLFSDAERS AFIELLERLA
TSHAVLILSA CRNDFYPLLV NYPSLMAGKA RGAHFDLAPP TRTELLQMIR LPAVAANLSW
EIDSDTAMPL DEMLCSDAAS NPDALPMLQY TLQALYLQRS DDDKLLVSVY RTLGGIEGAI
GKNAEQAISH LTEAEKASLP RILSLLVTLR EDEKSITSRT ARWSQLQSAA ETALVQAMVD
SRLFVSHLQN GEPCFSIAHE ALLRRWPRAT AWISEHNDSL SIKSRLQHLS QRWLSEDKHS
AYLLAEGKPL KEAQSLKQNP LFDLDERETD FIAASSKRAT MLRWTRRITV ALLCVLTLTS
VIMSVRSIEA EKLAQQKRLA AEDLLGFMVG DFADKMRGIG RMDLLDGISN KALEYFTDFS
SQDDEKYLSF DARFQHGQTL EAMGEVAYSR NKIDEARSAL LAAQEKMLPL LELQPDNLAL
LKTLGANAFW LGQLKYDVSD WAAARPFWEQ YLLYSQTMYV IAPEDKDALM ELSYAHNSLG
SVSMNQQEFA KAQQDFEESL QLKLLALKNV PEDSQLIADV ADTRSWLASA LTSLGNLDTA
IKLQEETQNQ LLNYLKPNDA YMRDRLASTL GRLAELLEYK GNFESALEKL LQAQNFTEKS
LLLDADNEVW KRDLFYIRTR ILFLNSFINN PRVKETSQSL LDFFDSNFKS MDKQRRDYLY
ANALFSVATY EIKNNSPLGY DSLKKSNTIF SELVKNAPQE RKYIIGFART NMAIVEARMT
VDNKEEYLTL CKETQKILQP LIEKDKNPEI TMPYLDSKNC QER
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