Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2498 |
Symbol | cysS |
ID | 4253069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2969331 |
End bp | 2970716 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638119133 |
Product | cysteinyl-tRNA synthetase |
Protein accession | YP_734626 |
Protein GI | 113970833 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0215] Cysteinyl-tRNA synthetase |
TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000973737 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0233858 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGATGT TGAAGATTTA CAATAGTATT ACCCGCCAAA AACAGGAATT TAAGCCAATT ACTCCCGGAA AAGTTGGGAT GTATGTATGC GGGGTGACCG TATACGATCT GTGTCATATT GGCCATGGGC GTACTTTTGT TTCCTTCGAT ATGATCGTTC GCTACCTGCG TTACGCGGGT TATGAAGTGA ATTTTCAACG TAACATCACC GATATTGATG ACAAAATCAT CAAACGCGCC AACGAAAACC AAGAAGATTG CAATACATTA ACCGATCGCT TGATTGGTGA AATGCACAAG GATTTCGATG CGCTGAATAT GATCCGTCCC GATTTCGAGC CCCGTGCCAC TCTGCACATT ACCGAAATCA TCGATATGGT TGAGCGTTTA CTGGCCCGTG GTCATGCCTA TGTGGCAGCC GATGGCGATG TGCTGTTCAG TGTGGCCTCT TTCCCTGAGT ACGGCCGTCT ATCAGGTCAG AACCTGGAGC AATTACAGGC GGGGGCACGG GTTGAGGTTG ACGATAACAA GCAAAATCCA ATGGATTTCG TGCTGTGGAA AATGTCTAAA CCGGGCGAGC CAACATGGGA GTCGCCATGG GGGCCGGGCC GTCCAGGCTG GCATATCGAA TGTTCGGCAA TGAACAGCAA GCACTTAGGC CTGCATTTCG ATATTCACGG TGGCGGTTCA GATTTACAAT TTCCTCACCA TGAGAACGAA ATTGCTCAGT CTTGCTGCGC CCATGATACG CCGTACGTGA ATTACTGGAT GCACACTGGC ATGGTGATGG TTGACCGCGA GAAGATGTCA AAGTCTTTAG GTAACTTCTT CACTATTCGT GATGTATTAG GCCATTACGA TCCTGAAACC GTGCGTTACT TCCTGCTATC GGGTCACTAC CGTAGCCAAA TCAACTATTC AGAAGAAAAC CTCAAGCAGG CGCGTGCCGC CTTAGAGCGT TTATACACTG CGATTAAAGA TGTTGACCTG ACTGTAGCGC CGGCACCTGC CGAAGAGTTT GTCGCTAAGT TTAAAGCGGC AATGGACGAT GACTTTAATA CGCCAGAAGC CTACTCAGTG CTGTTTGATA TGGTACGTGA GATCAACCGT TTGAAAACCA CCGATATGGC GCAGGCTTCA GCTATGGCTG TTGCCATGAA GCAACTGGCC GATGTATTGG GATTATTGCA CCAAGCGCCC GATGCCTTCT TTAAAGGCGA GGGTAGCGAT GATGAAGTGG CAGAGATTGA AGCGCTGATC GTTGAGCGTA ATCGTGCCCG CGTCGAAAAA GATTGGCCTG CGGCTGATGT TGCGCGTAAT CGTTTAAATG AGCTTGGTGT GGTGTTAGAA GATGGCCCAA GCGGTACTAC TTGGCGTAAG AAATAG
|
Protein sequence | MPMLKIYNSI TRQKQEFKPI TPGKVGMYVC GVTVYDLCHI GHGRTFVSFD MIVRYLRYAG YEVNFQRNIT DIDDKIIKRA NENQEDCNTL TDRLIGEMHK DFDALNMIRP DFEPRATLHI TEIIDMVERL LARGHAYVAA DGDVLFSVAS FPEYGRLSGQ NLEQLQAGAR VEVDDNKQNP MDFVLWKMSK PGEPTWESPW GPGRPGWHIE CSAMNSKHLG LHFDIHGGGS DLQFPHHENE IAQSCCAHDT PYVNYWMHTG MVMVDREKMS KSLGNFFTIR DVLGHYDPET VRYFLLSGHY RSQINYSEEN LKQARAALER LYTAIKDVDL TVAPAPAEEF VAKFKAAMDD DFNTPEAYSV LFDMVREINR LKTTDMAQAS AMAVAMKQLA DVLGLLHQAP DAFFKGEGSD DEVAEIEALI VERNRARVEK DWPAADVARN RLNELGVVLE DGPSGTTWRK K
|
| |