| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2476 |
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| Symbol | |
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| ID | 4253047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2944262 |
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| End bp | 2944627 |
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| Gene Length | 366 bp |
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| Protein Length | 121 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119108 |
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| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
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| Protein accession | YP_734604 |
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| Protein GI | 113970811 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00140537 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAATAA CACACCGTTT ACCCGCAATG GTGAGTGCCA TTGTCTTTTC AGCCCTGTTT
GCACTACCTG CGATGGCGGC CGATCCCGTT AAAGAAGCCA GTAAAGTACA AACTCAAGCT
AAGACCGATG CTAAAAGTAT GGCAATGGAT GCTAAGCAAG CCATGCCTGA TTCGGCTCAG
GTGAATATCA ATACCGCCTC GTCTGAGCAG TTACAAATGC TCAAGGGCAT TGGGGCGGCC
AAGGCGCAGG CCATCATAGA CTATCGAACG CAGAATGGTA AATTTAAGGC CATTGATGAG
TTGGCCAATG TCTCAGGCAT TGGCGCTAAG TTGATTGAGC AAAATCGCCA TATGATAAAG
CTCTAG
|
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| Protein sequence | MKITHRLPAM VSAIVFSALF ALPAMAADPV KEASKVQTQA KTDAKSMAMD AKQAMPDSAQ
VNINTASSEQ LQMLKGIGAA KAQAIIDYRT QNGKFKAIDE LANVSGIGAK LIEQNRHMIK
L
|
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