| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2461 |
|---|
| Symbol | |
|---|
| ID | 4253032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2924473 |
|---|
| End bp | 2924877 |
|---|
| Gene Length | 405 bp |
|---|
| Protein Length | 134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638119093 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_734589 |
|---|
| Protein GI | 113970796 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.086318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000463213 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTA AAAAGCATTC CAGTGTAGAC GAGGAAGCGC AAATTGATAT GACACCGATG
CTCGACATCG TGTTCATCAT GCTGATCTTC TTCATTGTAA CAACGTCATT CGTGAAACCA
TCTGGTTTGG ACTATAACAA ACCAAAAGCT TCACAAGCGA CTTCTAAGCC TTCGGCTAAC
ATCTTTATCG GCGTCAGCAA AACTGGCGTG ATCATGATGG AAAACCGTCA GGTTGATATC
GAGCGTGTAA CTGCAAACGT TGAGCGTATG CTAGCTGAAG CGCCTGAAGC AGCTGTGCTG
ATCCAGGCGG ATAAAGATAC GCAACACGGC TTAGTTGTTA AAGTTCTAGA CCAGGTCAAA
GCGGCTGGTA TAGATAAGAT TTCGGTATCT GCGGGGAACG ATTAA
|
|---|
| Protein sequence | MARKKHSSVD EEAQIDMTPM LDIVFIMLIF FIVTTSFVKP SGLDYNKPKA SQATSKPSAN
IFIGVSKTGV IMMENRQVDI ERVTANVERM LAEAPEAAVL IQADKDTQHG LVVKVLDQVK
AAGIDKISVS AGND
|
|---|
| |