| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2405 |
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| Symbol | |
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| ID | 4252976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2864659 |
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| End bp | 2867940 |
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| Gene Length | 3282 bp |
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| Protein Length | 1093 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119037 |
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| Product | RNAse E |
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| Protein accession | YP_734533 |
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| Protein GI | 113970740 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.133315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTA TGTTAATCAA TGCAACTCAA TCAGAAGAGT TGCGTGTTGC CCTCGTTGAC
GGGCAACAAC TGTACGATCT GGATATTGAA AGTCCTGGTC ACGAGCAAAA AAAATCCAAC
ATTTACAAGG GTAAAATCAC CCGCGTAGAA CCCTCTTTAG AAGCCGCTTT CGTTGACTAT
GGTGCCGAGC GCCACGGCTT CTTACCGCTA AAAGAAATCG CCAGAGAGTA CTTCCCTAAA
GGTTATTCTT TCCAAGGTCG CCCAAACATC AAAGAAGTGG TCAGTGAAGG ACAAGAAGTT
ATTGTTCAAA TTGACAAAGA AGAGCGCGGC AACAAAGGTG CTGCACTGAC GACCTTTATC
AGCCTTGCAG GTTCTTACTT AGTCCTGATG CCAAACAACC CTCGTGCTGG CGGTATTTCT
CGCCGTATCG AAGGTGATGA GCGCACCGAA TTAAAAGAGG CCATGGCCGA TTTAGAAGTG
CCCGCAGGTA TGGGACTTAT CGTGCGTACC GCGGGTGTTG GCAAAGAATC GACTGAACTG
AAGTGGGACT TAAAAGTTCT ACAACACCAC TGGGCTGCCA TTACCGAAGC CGCACAAAGT
AAAGCCGCTC CTTTCTTAAT TCACCAAGAA AGTAACGTCA TTGTACGTGC AATTCGTGAT
TATCTGCGCC GTGATGTGGG CGAGATCCTC ATCGACCACC CTCGCATTTT TGAAGAAGCC
AAGCAGCATA TCGCACTGGT ACGCCCTGAT TTCGTCGAGC GCGTAAAACT CTACGAAGCC
GAAGTGCCAT TGTTCACTCA CTTCCAAATC GAGTCGCAAA TCGAATCGGC ATTCCAACGT
GAAGTGCGCC TGCCATCGGG TGGTTCGATT GTTATCGACC CAACTGAAGC ATTAACCTCA
ATCGATATCA ACTCTGCCCG CGCAACGAAG GGCGGCGATA TTGAAGAAAC CGCATTAAAT
ACCAACCTTG AAGCCGCCGA TGAGATTGCC CGTCAATTGC GTCTGCGAGA CTTAGGTGGT
CTGGTCGTGA TCGACTTTAT CGATATGACG CCAGTGCGCC ATCAACGTGA AGTAGAAAAC
CGCCTGCGTG ATGCCGTGCA CCATGACCGT GCCCGCGTAC AATTAGGCCG CATTTCTCGC
TTCGGTCTGA TGGAAATGTC GCGTCAACGT CTGCGTCCAT CCTTAGAAGA ATCAGCTGCA
CATATCTGCC CTCGCTGTCA TGGCCAAGGC ACGATTCGTA GTACCGAATC TTTAGCGCTG
TCGATTCTGC GTTTGATGGA AGAAGAAGCC ATCAAGGAAA ACACCTCACA AATCGAAGCC
ATCGTGCCTG TCGATGTGGC GGCCTTCCTG CTGAACGAAA AACGCAAAGC GATTCGTATC
ACTGAGCAAC GCCATGATGT AGAAGTCTAT GTGATCCCAG ATCCGCACAT GATGACTCCT
GATTATCGCG TTATTCGTCA CCGCACTGAC GATGAAATCG ATGAATCCAG CTACAAGCGC
ATCGAACAGC CAGAAGCTAA GTTATACGAA CCCCGTAAAC TGGAACGCAC TGCTGCGCCA
GCACCAGCCT TAAAAGGCTT CACCGCACCG CAGAAAGTCG AACAAGCCGC TGCACCTGTT
GCCAACAAAG TGGAAGCAAC CGAGCCAGGT TTCTTCAGCA AACTGTTCAG TGCCATTGGC
GCCTTCTTCA GCTCAAGCGA TAAACCTGCG GCAGAAAAGA CCACAGAAAC CAAAAAGTCT
GACAGCCAAA CGGCCAATGC GAACCGTCGT AATCGTCGTA ATGACACTCG CCGCACTCGC
AATAACCAAG ATGCTGACAA AGCGAAAGAA GGCACCCGCG AGCCACGCAC TCGCAATGCC
AAGAAGTCGG CTGATGCACC TCAGGCTCAA GAGCGCCCAG CTCGTGAAAA AGATGAGAAT
GCAAAGCGCA CTAAACCAGA GCCTAAGAGT CGTAATCAAG CACCAAAAGA AGTGGTAGCC
GAGTCTCAAG ACGACACACC AAAGCAAGAA GTGGCCCGTG AGCGTCGTCA GCGCCGTAAC
ATGCGTCGTA AAGTACGCAT CGATAACGCC AATGAAACGA CCGAAGCGCC AATTCAAGAA
GAAGTGGTAT TAGCCGAAGT GGCCGCCGTT AATGCAGCCA ATACTGACGT TGCAACTGAG
CCACAAGCTG AGACGAAAGC ACCTCGCTCA CGTCGCCAGC CACGCAAAGA TGCCGCTGTT
GCCAATGAGA CAGTAGAAGC GACTGACGCA GCAAGCCAAG TGGAAGCAAA CGCTGAAGTT
AGCGCTGAAA AGCCAGTGGT TGAAAACCGT GCTGAGGCCC CAGCTGACGT AACTGAAGTG
AAGACCGAAG CCGAGACCGA TGCGGATAAC GCAGAACTCA GTGCCGATGC GGATGATAAA
GCGAAACGCG AATCTCGCGA TGGACAACGT CGTAGTCGCC GTAGCCCACG TCATTTAAGA
GCGGCCGGTC AACGTCGTCG CCGTGATGAA GATGAGCAAG GCGTCTCTGC ACCTGCACAA
TTCGTACCAA ACGATGCACT CGGTGATGCT CAAGACTACC CTGCGCCAAC CGCTCAAACT
GCAGAAGCAG CTGAGACCAC AGAAGCAAAA GCAACTGAAG TTGCCGCTGA ACCGACTGTC
ACTTCTCCTG CAGCTGTAGT CGAAACGGCA GATGTCAGTG TGGTTGCTGA AACCAATAAA
GCTGTTGAGA CTGAAGTTGT TGAGTCAGTA GCTACCGAGC AAGTGGCCAA GCTTAAAGCT
GAAGTTGCAG TAACAGAAGC TCCTGCTGAC ACTGCGGTAA ATAACAAGCC AGAGACGAGC
GTTAAGGCTG AAGACGTTGC TGTTGAGCCA GCTAAAGCGG TAGAAGCGGT TACAGAAGCC
ATTGTGACCC CAGCTGAAAC TCCAGTTGCT CAAGCGAAAA CAGAAACTGT CGCAGTTGAA
GCTGTCGCGC CCGAAGTGGA AAAAGCCGAA GTGAAAGATG CCGTGAAATC AGTGGCCTCA
GCTCCAATGG CAAAACCTGC GCCAATCGTT AAACCACAGG CGAAACCCGT TGTGACTCAA
GCTGTCGCAG CCCCTGCAGC TGAAACCGTG GTGAGCAAAC CCAAAGCCGC TAGCCGTTTT
GGTTCAATGG TGTCATCAGA GATGACCAAG CCGACGGTAG AAGTCAGAAC ACAGGTAGAA
GTGCCAAAAG GCCGCGAGTA TGACAATACT GCCTCAGCCG AAGTCACTGC GCCTAAGCTG
AAGCAAAGCA ATAGCGCCGA ATCGGATATG GCTCGTCCAT AA
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| Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY
GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVSEGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMADLEV PAGMGLIVRT AGVGKESTEL
KWDLKVLQHH WAAITEAAQS KAAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIFEEA
KQHIALVRPD FVERVKLYEA EVPLFTHFQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RLRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HICPRCHGQG TIRSTESLAL
SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPHMMTP
DYRVIRHRTD DEIDESSYKR IEQPEAKLYE PRKLERTAAP APALKGFTAP QKVEQAAAPV
ANKVEATEPG FFSKLFSAIG AFFSSSDKPA AEKTTETKKS DSQTANANRR NRRNDTRRTR
NNQDADKAKE GTREPRTRNA KKSADAPQAQ ERPAREKDEN AKRTKPEPKS RNQAPKEVVA
ESQDDTPKQE VARERRQRRN MRRKVRIDNA NETTEAPIQE EVVLAEVAAV NAANTDVATE
PQAETKAPRS RRQPRKDAAV ANETVEATDA ASQVEANAEV SAEKPVVENR AEAPADVTEV
KTEAETDADN AELSADADDK AKRESRDGQR RSRRSPRHLR AAGQRRRRDE DEQGVSAPAQ
FVPNDALGDA QDYPAPTAQT AEAAETTEAK ATEVAAEPTV TSPAAVVETA DVSVVAETNK
AVETEVVESV ATEQVAKLKA EVAVTEAPAD TAVNNKPETS VKAEDVAVEP AKAVEAVTEA
IVTPAETPVA QAKTETVAVE AVAPEVEKAE VKDAVKSVAS APMAKPAPIV KPQAKPVVTQ
AVAAPAAETV VSKPKAASRF GSMVSSEMTK PTVEVRTQVE VPKGREYDNT ASAEVTAPKL
KQSNSAESDM ARP
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