Gene Shewmr4_2394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2394 
Symbol 
ID4252965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2854926 
End bp2856164 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content51% 
IMG OID638119026 
Product3-oxoacyl-[acyl-carrier-protein] synthase II 
Protein accessionYP_734522 
Protein GI113970729 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase 
TIGRFAM ID[TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.33865e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTAAAC GTCGTGTAGT GGTAACCGGT TTAGGGTTAG TAACGCCCGT GGGCAATACT 
GTCGACACTA CTTGGAAAGC CCTGCTTTCG GGTAAGAGTG GTATTGCACC TATAACCAAA
TTTGATGCCA GCGAATTCAC CACTCGTTTC AGTGGTTCTG TAAAAGATTT CGATGTCGAG
CAGTACTTAA CCAAAAAAGA CGCCCGTAAA ATGGACCTCT TTATTCAATA TGGTATGGCT
GCGGGCATCC AAGCTATCCA AGACTCGGGT CTGGATATGA GCAAAGTAAA CCCAGGCCGC
GTCGGTACCG CTATTGGTGC GGGCATGGGG GGCATGTGGT TGATTGAACA AAACCATAGC
GCGTTATTAA GTGGTGGCCC TCGTAAAATT TCACCTTTCT TCGTGCCAAG TACCATCATC
AACATGATCG CCGGCCATTT ATCGATTATG TACGGTATGA CTGGCCCTAA CTTTGCCGTC
ACGACCGCTT GTACTACTGG TGTGCACAAC ATCGGTTTTG CGGCGCGCAC CATTGCCTAT
GGCGATGCCG ATGTGATGAT CGCCGGCGGC GCCGAAGATG TGACTTGTCC ATTAGGCGTA
GGTGGTTTTG GCGCAGCTAA AGCGCTGTCA ACCCGTAACG ATGACCCAAC GGCGGCTAGC
CGTCCGTGGG ACAAAGACCG TGATGGTTTC GTCATCGGTG ATGGCGCGGG TGTGATGGTG
ATGGAAGAAT ACGAGCATGC TAAGGCGCGC GGTGCGACCA TTTATGGCGA ACTTGTTGGC
TTTGGTATGA GCGGTGATGC GTTCCACATG ACATCGCCAC CAAGCGATGG TGCGGGCGCT
GCGGCGGCTA TGGTTAATGC GGTGAATGAT GCCAAGCTGC CATTTGAAAA AATTGGTTAT
ATCAATGCGC ACGGTACTTC AACGCCAGCG GGCGATAAAG CCGAAGCAGC AGCGGTGAAA
TCAGTATTTG GCGACCACGC TTATAATCTG CTAGTTAGTT CGACTAAGTC TATGACGGGT
CACTTGCTGG GCGCTGCGGG TGCGGTTGAA GCGATTTTCA CTTTGCTTGC GCTGCGCGAT
CAAGCCGTAC CGCCGACCAT CAACCTCGAT AATCCAGACG AAGGTTGTGA TTTAGACTTC
GTGGCACACA CTGCCCGCGA TGTGAAGTTA GAGTATGCTC TGTGTAACTC CTTCGGTTTT
GGTGGCACTA ACGGTTCATT GCTGTTTAAG AAAGTCTAA
 
Protein sequence
MSKRRVVVTG LGLVTPVGNT VDTTWKALLS GKSGIAPITK FDASEFTTRF SGSVKDFDVE 
QYLTKKDARK MDLFIQYGMA AGIQAIQDSG LDMSKVNPGR VGTAIGAGMG GMWLIEQNHS
ALLSGGPRKI SPFFVPSTII NMIAGHLSIM YGMTGPNFAV TTACTTGVHN IGFAARTIAY
GDADVMIAGG AEDVTCPLGV GGFGAAKALS TRNDDPTAAS RPWDKDRDGF VIGDGAGVMV
MEEYEHAKAR GATIYGELVG FGMSGDAFHM TSPPSDGAGA AAAMVNAVND AKLPFEKIGY
INAHGTSTPA GDKAEAAAVK SVFGDHAYNL LVSSTKSMTG HLLGAAGAVE AIFTLLALRD
QAVPPTINLD NPDEGCDLDF VAHTARDVKL EYALCNSFGF GGTNGSLLFK KV