Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2340 |
Symbol | |
ID | 4252911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2791034 |
End bp | 2791918 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118965 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_734468 |
Protein GI | 113970675 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00299163 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000559319 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAACG GAAGCATCGT AGCCTTAATC ACGCCAATGA ACAGTGATGG CTCAGTAGAT TTTGCAAGTC TTGAAAGGTT AGTCGAATTC CATATTGACC AAGGCACAGA CGCCATCGTC GCCGTGGGTA CCACAGGCGA GTCAGCGACT CTGCCAATGA ATGAGCACGT TACTGTGGTC GCGCAAACCG TTAAGTTTGC CGCAGGCCGT ATTCCTGTGA TTGGTGGCAA TGGCGCGAAT GCGACATCTG AAGCAATCGA ACTCACCAAG TCTTTATCTA AAGTTGGAGT TGCTGCCATG CTTGGCGTGA CACCTTACTA CAATAAACCC ACGCCTAAGG GTTTAGTCGC ACACTATAAA GCTGTAGCGG CAAGCACTGA TATTCCGCAA ATTCTCTATA ACGTACCAGG CCGCACCGCG GTGGATATGA AGCCCGAAAC TGTGGCTGAG TTAGTGGGCG TGAGCAATAT CATTGGCGTA AAAGAAGCCA CGGGCGATGT ATCACGCGTT AAGCGTTTAC GTGAGCTTTG TGGTAACGAC TTTATGTTGT ATAGCGGCGA TGATGCAACG GCGCGGGAGT TTTTACTCCT TGGCGGTAAT GGCGTGATTT CGGTTGCCAA CAATATAGTG CCAAAAGCCT TTAAAGCCAT GTGTGATGCA GCACTTGCGG GCAATGCCGA ATTAGCGGCG AGCATCGATG AGCCGCTACG TGGTCTGTAT ACCACACTGT TCTGCGAAGC GAACCCAATC CCTGTGAAGT GGGCCGCCCA CCGTATGGGT CTTATCGAGT GTGGTCATAT TCGTTTACCT TTGACTGAAC TTTCTGAGCA ATGTCATGGT CTGTTGTTAG ATGCAATGAC TCGCGCCCAG ATAGAGGTTA AATAA
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Protein sequence | MINGSIVALI TPMNSDGSVD FASLERLVEF HIDQGTDAIV AVGTTGESAT LPMNEHVTVV AQTVKFAAGR IPVIGGNGAN ATSEAIELTK SLSKVGVAAM LGVTPYYNKP TPKGLVAHYK AVAASTDIPQ ILYNVPGRTA VDMKPETVAE LVGVSNIIGV KEATGDVSRV KRLRELCGND FMLYSGDDAT AREFLLLGGN GVISVANNIV PKAFKAMCDA ALAGNAELAA SIDEPLRGLY TTLFCEANPI PVKWAAHRMG LIECGHIRLP LTELSEQCHG LLLDAMTRAQ IEVK
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