Gene Shewmr4_2340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2340 
Symbol 
ID4252911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2791034 
End bp2791918 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content49% 
IMG OID638118965 
Productdihydrodipicolinate synthase 
Protein accessionYP_734468 
Protein GI113970675 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00299163 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.59319e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAACG GAAGCATCGT AGCCTTAATC ACGCCAATGA ACAGTGATGG CTCAGTAGAT 
TTTGCAAGTC TTGAAAGGTT AGTCGAATTC CATATTGACC AAGGCACAGA CGCCATCGTC
GCCGTGGGTA CCACAGGCGA GTCAGCGACT CTGCCAATGA ATGAGCACGT TACTGTGGTC
GCGCAAACCG TTAAGTTTGC CGCAGGCCGT ATTCCTGTGA TTGGTGGCAA TGGCGCGAAT
GCGACATCTG AAGCAATCGA ACTCACCAAG TCTTTATCTA AAGTTGGAGT TGCTGCCATG
CTTGGCGTGA CACCTTACTA CAATAAACCC ACGCCTAAGG GTTTAGTCGC ACACTATAAA
GCTGTAGCGG CAAGCACTGA TATTCCGCAA ATTCTCTATA ACGTACCAGG CCGCACCGCG
GTGGATATGA AGCCCGAAAC TGTGGCTGAG TTAGTGGGCG TGAGCAATAT CATTGGCGTA
AAAGAAGCCA CGGGCGATGT ATCACGCGTT AAGCGTTTAC GTGAGCTTTG TGGTAACGAC
TTTATGTTGT ATAGCGGCGA TGATGCAACG GCGCGGGAGT TTTTACTCCT TGGCGGTAAT
GGCGTGATTT CGGTTGCCAA CAATATAGTG CCAAAAGCCT TTAAAGCCAT GTGTGATGCA
GCACTTGCGG GCAATGCCGA ATTAGCGGCG AGCATCGATG AGCCGCTACG TGGTCTGTAT
ACCACACTGT TCTGCGAAGC GAACCCAATC CCTGTGAAGT GGGCCGCCCA CCGTATGGGT
CTTATCGAGT GTGGTCATAT TCGTTTACCT TTGACTGAAC TTTCTGAGCA ATGTCATGGT
CTGTTGTTAG ATGCAATGAC TCGCGCCCAG ATAGAGGTTA AATAA
 
Protein sequence
MINGSIVALI TPMNSDGSVD FASLERLVEF HIDQGTDAIV AVGTTGESAT LPMNEHVTVV 
AQTVKFAAGR IPVIGGNGAN ATSEAIELTK SLSKVGVAAM LGVTPYYNKP TPKGLVAHYK
AVAASTDIPQ ILYNVPGRTA VDMKPETVAE LVGVSNIIGV KEATGDVSRV KRLRELCGND
FMLYSGDDAT AREFLLLGGN GVISVANNIV PKAFKAMCDA ALAGNAELAA SIDEPLRGLY
TTLFCEANPI PVKWAAHRMG LIECGHIRLP LTELSEQCHG LLLDAMTRAQ IEVK