Gene Shewmr4_2338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2338 
Symbol 
ID4252909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2788478 
End bp2789560 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content49% 
IMG OID638118963 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_734466 
Protein GI113970673 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00136978 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.41161e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAAAA TCATAATTAT CATCGCTATT TTGGCTGCGG GCTGGTTTGG ATACCAAAGT 
ATGCAACCCC AAGCTCCGCA GAAAGCTAAT GTTAAGCTCA CCCCTAATGT GGTCATCGCG
ACTGCCGCTA TGGCGCCTGT GCGTGACGAA GTTGAAGCCA TAGGCACCAA CAAGGCCTAT
GAGTCTGTCA CTATCACGCC TAAAGTCACC GATGTGGTCA CCTCACTCAA ATTTGATGAT
GGAGATATCG TTAAGAAGGG CGACTTATTG GTGCAACTGC AAAATGCCGA GCAGATAGCC
AAAGTGAAAG TGGCGCAGGT GAAGGTGAGT GATAATCAAC GCGAGTTAGC GCGGATCAGC
TCTCTGGTGA CCAGTCGCAC TGTGGCAGAG TTAGAGCGTG ACCGCCTGCA AACTTTAATC
GATACCACCC GTGCCGAGTT AGAGCAGGCA CAATCATCCC TGAATGATCG CAGCATAGTT
GCGCCCTTTA ATGGTCGTTT AGGCCTGCGC CAAGTGAGTG TGGGTAGCCT AGTGACTCCG
GGTACTGAGA TCACCACACT CGATGATATC TCTAAGATTA AATTAGACTT TTCGGTGCCT
GAGCGCTTTA TTCAAGACTT ACAGCCCGGC AAACAAGTCG AAGCCAAAGC CGTAGCGTTT
CCCGATGAAA TCTTTAAAGG CAAAGTGATT TCTATCGATA GCCGCGTTAA TCCAACCACT
CGCGCCGTGA TTGTGCGCGC CGAAATCCCA AATCCAGATT TACGTTTACT GCCCGGCATG
CTGATGAAGG TGAAACTCAT CAAGCGCAGC CGTGAGGCCT TGATGTTGCC TGAGTCGGCG
ATTATCCCAA TCCAAAAAGA GCACTTTGTT TACAGCGTCA ATAAGGACAA TGTGATTGAG
CGTAAGCAAG TCACCATTGG TATTCGTACC CGCGGCTGGG TCGAAATCCT CGGTGGTTTA
GAGATTGGTG AAAATGTGGT GATCCGCGGG CTACTCAAAG TGCACCCAGG CGATGTGGTC
AAAACCGAAT TGGCTGAGAA GTTTAGCTAT CTTTCCGATG CTAATGCGGA GCCAAGTGTA
TGA
 
Protein sequence
MKKIIIIIAI LAAGWFGYQS MQPQAPQKAN VKLTPNVVIA TAAMAPVRDE VEAIGTNKAY 
ESVTITPKVT DVVTSLKFDD GDIVKKGDLL VQLQNAEQIA KVKVAQVKVS DNQRELARIS
SLVTSRTVAE LERDRLQTLI DTTRAELEQA QSSLNDRSIV APFNGRLGLR QVSVGSLVTP
GTEITTLDDI SKIKLDFSVP ERFIQDLQPG KQVEAKAVAF PDEIFKGKVI SIDSRVNPTT
RAVIVRAEIP NPDLRLLPGM LMKVKLIKRS REALMLPESA IIPIQKEHFV YSVNKDNVIE
RKQVTIGIRT RGWVEILGGL EIGENVVIRG LLKVHPGDVV KTELAEKFSY LSDANAEPSV