Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2337 |
Symbol | |
ID | 4252908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2785386 |
End bp | 2788481 |
Gene Length | 3096 bp |
Protein Length | 1031 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638118962 |
Product | acriflavin resistance protein |
Protein accession | YP_734465 |
Protein GI | 113970672 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0120926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000298899 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCCTGA CAGATCTTTC CGTTAAACGA CCGGTATTTG CCTCGGTTAT TAGCTTATTG CTGGTGGCCT TTGGTTTAGT GGCATTCGAT AAGTTACCGC TACGGGAATA CCCTAACATC GACCCGCCGA TTGTTTCGAT TGAAACCAAC TATCGCGGCG CCAGTGCCGC CGTGGTTGAG AGCCGTATCA CCCAGCTGAT TGAAGATAGG ATCAGCGGCG TCGAAGGTAT TCGCCATGTG AGTTCATCGA GCAGCGATGG TCGCTCGCAG GTGACCTTAG AGTTCGATAT CAGCCGCAAC ATTGAAGATG CGGCCAACGA CGTACGCGAC AGAATTTCGG GCCTGTTAGA TAACTTACCC GAAGAAGCCG ATCCCCCAGA GGTACAAAAG GCCAACGGTG GCGATGAAGT GATTATGTGG CTCAACCTAG TGTCGGATCA AATGACCACA TTAGAGCTGA CCGATTACAC CCGTCGTTAT TTATCCGACC GTCTGTCCGT GGTGGACGGG GTGTCGATGA TCCGTATCGG TGGTGGCAAA GTTTACGCCA TGCGCGTGTG GCTCGATAGA CAAGCCCTTG CATCCCGAAG CCTTACAGTT GCTGATGTTG AAGCCGCGTT AAGGGCTGAA AACGTTGAGT TGCCCGCAGG TTCGCTCGAG TCCAAGGAGC GCCACTTTAC CGTGCGTTTA GAGCGTAGTT ATCGCACCGC CGAGGACTTT GCCAATTTGG TGATTTCCCA AGGCGAAGAC GGCTATTTAG TCAAACTTGG CGATGTGGCA AAGGTGGAAA TTGGCTCGGA AGAAGAGCGC ATCATGTTCC GCGGCAACAA GGAGGCCATG ATCGGTCTTG GTGTGTCGAA ACAGTCGACC GCCAACACCT TAGAAGTGGC CCGCGCCGTT AACGCCTTAG TCGATAAAAT CAATCCAACC TTACCCGCTG GCATGTCGAT TAAACGCAGC TACGACAGCT CAGTGTTTAT CGAAGCCTCG ATTAAAGAGG TATACCAAAC CCTATTCACC GCCATGGTGC TGGTGATCAT CGTGATTTAT CTGTTCCTTG GCAGCGTGCG CGCCATGTTA ATCCCTGCTA TTACCGTGCC CGTGTCTTTG CTCGGGACGT TTATCGTCCT CTATGCGCTA GGATACACAA TCAACCTGTT GACGCTGCTT GCGATGATCC TCGCCATCGG TATGGTGGTA GACGATGCGA TTGTGATGTT GGAAAACATT CACCGCCGTA TCGAAGAAGG GGATTCACCC TTAAAGGCGG CATTCTTGGG TGCCCGTGAA GTGGCCTTTG CGGTTATCGC CACCACCTTA GTGCTAGTGG CGGTATTTAT GCCGATCACT TTCCTAGAAG GGGACTTAGG TAAGCTCTTT AAGGAGTTTG CGGTGGCCAT GAGCGCGGCG GTGATCTTCT CCAGTATCGT GGCCTTAACC TTAAGCCCGA TGATGTGTTC TAAGCTGCTT AAACCCGCGT CGCAGGATTC GTGGTTAGTG CGTAAGGTCG ATAGCATTAT GACGGGGATT TCCCGTGGCT ATCAAAGCTC GCTTGAGAAG GCGATGGCAA GACCTGTGCT GATGTCGATA TTAGTCTTGA TTGCGCTCGG GAGCAGTGTG CTGCTCGCCC AAAAAGTGCC GCAGGAATTT GCGCCGCAGG AGGACCGGGG TTCGTTATTT TTGATGGTGA ACGGGCCGCA GGGTGCGAGT TACGAATATA TCGAATCCTA CATGAACGAA GTGGAAAACC GGTTAATGCC GTTGGTGGAC TCGGGAGACA TTAAACGCTT GCTGATCCGT GCGCCCCGTG GCTTTGGCCG CGCCGCCGAC TTCTCTAATG GTATGGCGAT TATCGTGCTC GAAGATTGGG GACAACGTCG CCCGATGAAA GAAGTGATCG GCGATATTAA CAAGCGCCTC GCGGATTTAG CCGGTGTGCA AGCTTTCCCT GTGATGCGTC AAGCCTTTGG CCGTGGCGTG GGTAAACCTG TGCAGTTTGT GATTGGTGGC CCAAGCTACG AAGAGTTGGC CCGCTGGCGC GACATTATGA TGGAAAAGGC GGCGGAAAAT CCTAAATTGC TTGGCCTTGA CCACGACTAT AAAGAGACCA AACCGCAGCT TAGAGTCGTG ATCGACAGGG ACAGGGCGGC CAGCCTTGGG GTATCGATTT CCAATATTGG TCGCACTTTA GAATCGATGC TGGGCTCGCG TTTAGTCACC ACCTTTATGC GCGATGGCGA AGAGTATGAT GTGATTGTGG AAGGGGAACG CAGTAACCAA AATACCGCGG CCGATCTGCA AAATATCTAT GTTCGCTCTG AACGGACCAA GGAGTTGATC CCACTGTCGA ACTTAGTAAC GGTCGAAGAG TTTGCCGATG CCAGCTCCCT TAACCGTTAT AACCGTATGC GGGCGATCAC TATAGAAGCC AGCTTGGCGG ATGGTTATAG CCTAGGTGAG GCGCTGGATT ACCTCAATCA GGTGGCGCGT GCTTATCTGC CTGCGGAAGC TGTGATCAGC TACAAGGGAC AATCTTTGGA TTATCAAGAG TCTGGCAGCT CAATGTACTT TGTGTTCCTG CTGGCGCTGG GGATTGTATT CCTAGTATTA GCGGCGCAGT TCGAAAGCTA TATTCACCCT ATGGTGATCA TGCTGACGGT ACCGCTGGCC ACGGTTGGCG CCTTGATTGG GCTGTGGTTT ACGGGCCAGA GTCTCAATAT CTACAGCCAG ATTGGGATTA TTATGCTGGT GGGCCTTGCG GCGAAAAACG GTATTCTTAT CGTCGAATTT GCCAACCAGT TGCGGGATAA GGGCGTCGAT TTCGACCGCG CCATTATTCA AGCCTCTTGT CAGCGTTTAC GCCCCATCCT AATGACGGGG ATTACCACTG CCGCAGGCGC AGTACCTCTG GTATTGGCCG CTGGTGCGGG GGCGGAAACC CGCTTCGTGA TTGGTGTGGT GGTGCTTTCG GGCATTATGC TGGCGACCTT GTTCACTATC TTTGTGATCC CAACCGCCTA CGGTCTCTTT GCCCGTAACA GCGGTTCGCC AGAAGCGATT GCCCAGCAAT TAGATAAGGA GTTGGCGCAG GATTAA
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Protein sequence | MILTDLSVKR PVFASVISLL LVAFGLVAFD KLPLREYPNI DPPIVSIETN YRGASAAVVE SRITQLIEDR ISGVEGIRHV SSSSSDGRSQ VTLEFDISRN IEDAANDVRD RISGLLDNLP EEADPPEVQK ANGGDEVIMW LNLVSDQMTT LELTDYTRRY LSDRLSVVDG VSMIRIGGGK VYAMRVWLDR QALASRSLTV ADVEAALRAE NVELPAGSLE SKERHFTVRL ERSYRTAEDF ANLVISQGED GYLVKLGDVA KVEIGSEEER IMFRGNKEAM IGLGVSKQST ANTLEVARAV NALVDKINPT LPAGMSIKRS YDSSVFIEAS IKEVYQTLFT AMVLVIIVIY LFLGSVRAML IPAITVPVSL LGTFIVLYAL GYTINLLTLL AMILAIGMVV DDAIVMLENI HRRIEEGDSP LKAAFLGARE VAFAVIATTL VLVAVFMPIT FLEGDLGKLF KEFAVAMSAA VIFSSIVALT LSPMMCSKLL KPASQDSWLV RKVDSIMTGI SRGYQSSLEK AMARPVLMSI LVLIALGSSV LLAQKVPQEF APQEDRGSLF LMVNGPQGAS YEYIESYMNE VENRLMPLVD SGDIKRLLIR APRGFGRAAD FSNGMAIIVL EDWGQRRPMK EVIGDINKRL ADLAGVQAFP VMRQAFGRGV GKPVQFVIGG PSYEELARWR DIMMEKAAEN PKLLGLDHDY KETKPQLRVV IDRDRAASLG VSISNIGRTL ESMLGSRLVT TFMRDGEEYD VIVEGERSNQ NTAADLQNIY VRSERTKELI PLSNLVTVEE FADASSLNRY NRMRAITIEA SLADGYSLGE ALDYLNQVAR AYLPAEAVIS YKGQSLDYQE SGSSMYFVFL LALGIVFLVL AAQFESYIHP MVIMLTVPLA TVGALIGLWF TGQSLNIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDKGVD FDRAIIQASC QRLRPILMTG ITTAAGAVPL VLAAGAGAET RFVIGVVVLS GIMLATLFTI FVIPTAYGLF ARNSGSPEAI AQQLDKELAQ D
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