Gene Shewmr4_2334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2334 
Symbol 
ID4252905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp2783559 
End bp2784242 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content46% 
IMG OID638118959 
Productnegative transcriptional regulator 
Protein accessionYP_734462 
Protein GI113970669 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0188338 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0316275 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAGTA AGAAAAACTT TCTATCATCT AATACTCCCA ATATGACAAG GCTTGACATG 
TATATCCCTA AAAATATGGC TCTCCACGAT AAGCAAGCGA TAGCCGACTT AATTAACCAA 
TTTGGTTTTG GACTGCTCAT CTCCCCTTCC TTAGAAGCGA CCCACTTACC TCTACTTTAT 
GAAGCGGCCG AGGATGGGCA AGAGTATCTC TATGGTCATA TGGCAAAAGC CAATGGTCAT 
TGGCAGCAGC TCGATGGTCA ACAGGTACTA GTGGTGTTCT CTGGGCCGCA TTCCTATATT 
TCACCCACTT GGTACGCTAG TGGTCCTGCG GTACCCACTT GGAACTATGC TGCAGTTCAC 
TGCACTGGCA GAGTCGAGAT CTTAGATGCA AGCGCAGCCG CCAAAGCCAT AGACAAATTA 
ATCGAAAAAT ATGAACCTAG CCTATCGGGA AATGCAGCCA TAATGCCTGC TGAGTATGTC 
GACAAACTCT CGCAGGCGAT TGTCGGCTTT CGCGTAATTG TCGATTCGAT TCAAGCGAAG 
GAAAAATTAG GACAACACAG AAAGCGAGAA GACCAAATGG GTGTCTATCA CGCCTTGGCC 
AATAGTGCTT CAGCCGAAAG TCGCGCCTTA GCAGAATACA TGCTTAACAG AAATCTTGGG 
ACTGGGCAGA ATAAGGAAGC ATGA
 
Protein sequence
MGSKKNFLSS NTPNMTRLDM YIPKNMALHD KQAIADLINQ FGFGLLISPS LEATHLPLLY 
EAAEDGQEYL YGHMAKANGH WQQLDGQQVL VVFSGPHSYI SPTWYASGPA VPTWNYAAVH 
CTGRVEILDA SAAAKAIDKL IEKYEPSLSG NAAIMPAEYV DKLSQAIVGF RVIVDSIQAK 
EKLGQHRKRE DQMGVYHALA NSASAESRAL AEYMLNRNLG TGQNKEA