Gene Shewmr4_2302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2302 
Symbol 
ID4252873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2748563 
End bp2750791 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content49% 
IMG OID638118927 
Productpeptidyl-dipeptidase Dcp 
Protein accessionYP_734430 
Protein GI113970637 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0339] Zn-dependent oligopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.26304e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGGAC TAAGCCTAAA ATCACAGGCC CTTAACGCGC GCACACTCAA ACCACACGCT 
ATTAAACTGA CCTTTAGCGC CATCACGCTC GCCCTCGCCT TAAGTGGCTG CAGCGCACAG
CACAGCGATA CTGCGGCGCA GGCGACAGTC GCACCGAATG CGATGTCGGC GCAGATCATC
AGCCAAAATG CCAGCAACCC ATTCTTTAAA CCCTATGATA CGTTTATGGA AATTCCGGCC
TTCGACAAGA TTAAGCCTGA GCATTTCCTC CCTGCATTTA AGGCGGGTAT CGCCCAGCAA
CACGAAGAAA TTCAAGCGAT TGTCGATAAC AAAGACAAGC CTACCTTCGC CAATACCATC
GAAGCAATGG AATTTTCGGG CGATCTCGTT ACCCGCGTAT CCAACGTCTT CTTTAACTTA
ACTGGCGCGG ATACCACTCC TGAGCTGCAA GCTATTTCCA AGGAAGTCTC GCCGATGTTA
TCGTCTGCCG AAGACGATAT CTTATTGAAC GATAAACTAT TTCAACGTGT TAAAGCCGTT
TATGACAGCA AAGGCAGCCT AAAGCTCAAC ACGGCGCAGG CCAAATTACT CGAAGACACC
TATAAGTCGT TCACCCGTGG CGGTGCTAAC CTCAGCGAGC AGGATAAAAC CAAGCTGCGC
GCCCTGAATG AAGAAATCGG CAAGCTTAAC TTAGCCTTTG GTGACAATCT GTTAGCCGAA
ACCAATGCCT TCGAGCTGGT GATTGATAAG CAAGCTGACC TGTCTGGTTT ACCCGCCGAT
GTGATTGCCA CTGCCGCCGA AACCGCGAAA AAGCGTGGCC ATGAAGGCAA ATGGGTATTT
ACTACATCAC GCCCATCTAT CACGCCGTTT TTAACCTATG CCGATAATCG CGAGTTACGC
GAAAAGCTCT ATAAGGGTTA TATCGAGCGC GGTAACAACA ATAATGCCAA TGATAACAAA
GTCATTCTGG CAAAAATTGC CGCACTGCGC GCCGAACGTG CACAGCTCAT GGGCTATAAA
ACCCATGCAG ATTTTGTGTT AGAAGAGCGC ACCGCCAAGA CACCAGAAAA TGTCTATGGC
TTACTCAATA AAGTCTGGCC AGCAGCCCTT GCCCAAGCCA AGGCCGAAGT TGCGGATATG
CAGGCATTAA TCGACAGCCA AGGCGGCAAG TTTAAGCTGC AAGCTTGGGA TTGGGATTAC
TACGCCGACA AAATCCGTGT CGCGAAGTAC AGCTTTAACG AGCAGCAAAC TCGCCCTTAC
TTCTCCCTCG ACAGCACTTT AAAAGGCGTG TTCTATACGG CCAATCGCCT CTATGGCTTA
ACCTTTAAAG AACGTACTGA CTTACCTAAA TACAACCCAG AAGTACGTAC TTGGGAAGTG
TACGATAAAG ACGGCAAGCT TATGGCCATC TTTATGGGCG ACTATTTTAC CCGTGATAGC
AAACGCGGCG GCGCCTGGAT GAACTCGTTC CGCAAGCAAT ACCATATGAA TGGTGTCGAT
TCGAAACCCA TTATTGTCAA CGTGTTGAAC TACCCTCGCC CAGCGGGTAA TGAGCCTGCG
TTACTCACCT TCGATGAAGC CAGCACCCTG TTCCATGAGT TTGGCCATGC GCTCCACGGC
ATGTTATCCA ATGTCGAATA TCGCTCTCAA GGCGGAACGG CAGTACCTCG CGACTATGTA
GAGTTCCCTT CACAGGTCAA CGAAAACTGG ATGACTCAGC CTGAAGTGCT CGCGCAATTT
GCTAAGCACT ACAAAACTGG TGAAGTAATC CCGCAGGAAC TGGTGAAAAA AATCCAAGCC
GCCAGCAAAT TCAACCAAGG CTTTGCGACC GTTGAATATA TGGCCGCCAC TAAGCTCGAT
TTAGATTGGC ACACCCTAAC CGATACCACG CCTAAGGATG CCGCCAAGTT TGAGGCCGAC
TCCTTAGCCG CCATGGGATT GATTAATGAG ATCAGCCCAC GTTACCGCAG CACTTACTTC
TCGCATATCT TCGCGGGCGG TTATTCTGCT GGGTACTACA GCTACCTCTG GTCTGATATT
TTAGGTGCCG ATGCCTTCGA AGCCTTTAAA GAAAATGGCA TTTTCGATAA AGCGACAGCC
GATGCCTTCC GTAACAACAT CTTGTCTAAG GGTGGCAGTG ATGACCCTAT GCTGATGTAT
AAAAACTTCC GTGGTAAAGA AGCTGGCATT GAGCCACTGC TACGTAGTCG TGGTCTGTTA
GCGGAGTAA
 
Protein sequence
MKGLSLKSQA LNARTLKPHA IKLTFSAITL ALALSGCSAQ HSDTAAQATV APNAMSAQII 
SQNASNPFFK PYDTFMEIPA FDKIKPEHFL PAFKAGIAQQ HEEIQAIVDN KDKPTFANTI
EAMEFSGDLV TRVSNVFFNL TGADTTPELQ AISKEVSPML SSAEDDILLN DKLFQRVKAV
YDSKGSLKLN TAQAKLLEDT YKSFTRGGAN LSEQDKTKLR ALNEEIGKLN LAFGDNLLAE
TNAFELVIDK QADLSGLPAD VIATAAETAK KRGHEGKWVF TTSRPSITPF LTYADNRELR
EKLYKGYIER GNNNNANDNK VILAKIAALR AERAQLMGYK THADFVLEER TAKTPENVYG
LLNKVWPAAL AQAKAEVADM QALIDSQGGK FKLQAWDWDY YADKIRVAKY SFNEQQTRPY
FSLDSTLKGV FYTANRLYGL TFKERTDLPK YNPEVRTWEV YDKDGKLMAI FMGDYFTRDS
KRGGAWMNSF RKQYHMNGVD SKPIIVNVLN YPRPAGNEPA LLTFDEASTL FHEFGHALHG
MLSNVEYRSQ GGTAVPRDYV EFPSQVNENW MTQPEVLAQF AKHYKTGEVI PQELVKKIQA
ASKFNQGFAT VEYMAATKLD LDWHTLTDTT PKDAAKFEAD SLAAMGLINE ISPRYRSTYF
SHIFAGGYSA GYYSYLWSDI LGADAFEAFK ENGIFDKATA DAFRNNILSK GGSDDPMLMY
KNFRGKEAGI EPLLRSRGLL AE