Gene Shewmr4_2290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2290 
Symbol 
ID4252861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2731482 
End bp2732396 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content49% 
IMG OID638118915 
ProductLysR family transcriptional regulator 
Protein accessionYP_734418 
Protein GI113970625 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.11943e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCG ATATTGATGC TTTTAATGTG CTGCAAGTGC TGGTGGAAGA GGGCAGTTTT 
GCCAAAGCCG CCGAGCGTTT ACACAAGGCG CAATCGGCGG TCAGCTATCA GGTCAAAAAG
CTGGAAGAAC ATTTAGGTGT GCAACTTTTT AGTCGGGATC AATACCGCGC CGAGTTGACG
AGTGAAGGGC GGGTGATCTT GGCCGAGGGG CAAAGACTGT TGCAACACCT TGCCAATATT
GAACATCTTG CCAGTCGTTT CAGTGAAGGT TGGGAGCCTA AGCTTGAGTT AGTGATCGAT
GGCGCCTTGC CGATGGAGCC GATTATGACG GCACTTAAAC GGATGGCAGA GCATCAAATT
CCGACAAAAA TTCAGCTCAA TATGGAGTTT TTGGGTGGTG TGCAGCACAG ATTCGAGCGT
GACAATGCAG ATCTGATGTT GGTTAAAGAC TACCGCACAG GCCCCTATTA TCACCCACAG
CCCCTCCCTG CGATAACCAG TGTACTGGTG ACGAGTGCTT TACATCCCTT GGCTCAACAA
AAACACATCA GTTTGCCCGA GTTACAGCAA CATGTTGAGC TGACCATCGA AGATTCCTCC
CCCAATAAGA CTTATCGAGA TGAGCTGCAA TTCGGTGGCG ATAAAGTGTT CTATCTTTCT
GGTTTTATTA TGAAAAAGAA CGCCTTGTTA AAAGGGCTCG GTTTTGGTTG GTTGCCTGAT
TTTCTGGTGC AGGAGGAGTT GTTGAGCGGT GAGCTTGTGG AGGTCGACTT TGTCGGTGGC
AGTCGCTATA CCTTTACTCC CCAATTAGTG TCGACCCTTG AGCGCCCCTT GGGCCGCGCT
GGCAAACTCT TTACCGAATT AATCCTAGAG GAATTTGCTA AAGCAGGGCA GTTTAATGGG
GTGGGATTAG GTTAA
 
Protein sequence
MRIDIDAFNV LQVLVEEGSF AKAAERLHKA QSAVSYQVKK LEEHLGVQLF SRDQYRAELT 
SEGRVILAEG QRLLQHLANI EHLASRFSEG WEPKLELVID GALPMEPIMT ALKRMAEHQI
PTKIQLNMEF LGGVQHRFER DNADLMLVKD YRTGPYYHPQ PLPAITSVLV TSALHPLAQQ
KHISLPELQQ HVELTIEDSS PNKTYRDELQ FGGDKVFYLS GFIMKKNALL KGLGFGWLPD
FLVQEELLSG ELVEVDFVGG SRYTFTPQLV STLERPLGRA GKLFTELILE EFAKAGQFNG
VGLG