Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2269 |
Symbol | |
ID | 4252840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2714036 |
End bp | 2715310 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118894 |
Product | lytic murein transglycosylase |
Protein accession | YP_734397 |
Protein GI | 113970604 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B [TIGR02283] lytic murein transglycosylase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00964574 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTATC TTGCCGCCAG TATCGCCGCG TGTGTGAGCT TAAGTGCGTG TTCGAGCGCG CCAACCTCGA GCGGTAATAG TCAAACCGCG ATCGCCGAGA CGCAAGCCGC CGTGCAAGAA ATGCAGCTTA GTGACACCAT TGCCGCCCAT GCTGAGGCAT TTCCTACCTG TGTGGCTAAC CTACAGGAGC GCGCACGTAG TGAAGGCTTA TCTGAAGCCA CCATCAAGGA CACAGTCGCT AGTTTGCAGT TTGTGCCTAA AGTGATTGAG CTTGACCAAG CTCAGCCCGA GTTTAGCCAA ACCTTCAATA ATTATTTTAC CAAGCGGGCG ACCGATTGGC GGGTGAATGA AGGCCGCCGT TTACTGAAAA AACACCGCGC GCTGCTCGAT AAATTGGCGC AGGAATACGG TGTGCCACCA CAATATATTC TGTCTTTCTG GGGACTTGAG ACTAACTACG GTTCCTACAA AGGCAAAATG TCCGTGTTAG ATTCTCTTGC TACCTTGGCC TGTGAGCCGC GTCGCAGTGG CTATTTTACG ACTGAGCTAA TGCAAGCGCT TAAGTTAAAA GAAAAATACG GCTTTGATAA GAGCACTATG GTGGGCTCTT GGGCCGGCGC CATGGGGCAC ACCCAGTTTA TGCCCTCGGC CTATGCAAAA TATGCCATCG ATGGGGATGG CGACGGTAAG GCCGATTTGT GGAATAGCAC CGAAGATGCA CTCACCTCGG CGGCGAACTT TTTGCAGCAC TTAGGCTGGC AACGCAATGA GCGTTGGGGG CGTGAAGTGA TATTGCCGCG CAATTTCAGC TATGAAAACC TTGGCGCTAA ACAGGCGCAG CCGCTATCCC AATGGGCGGC GCAATCCTTA GTGCAAAGTA ATGGTCAGCC TTTACCCGCT ATCGATATGA AGGCGGCGCT GTATTTGCCC TCGGGTCATA CTGGTCCCGC GTTTTTAGGC TATGAAAATT TCAATGTGAT CATGCGTTGG AACCGCTCTG AGTTTTACGC CATTACCGTT GGTCATTTGG CCGATAGAAT TAATGGTGGC GAACCATTAA AAGTGGCACC GCCCGAGCAG CCACGTTTGA GTCGTGAGCA AATCAAACAG TTACAAACCA AGCTGAATGA ATCAGGCTTC GATGTCGGTA AACCCGATGG CGTACTTGGG CGTAACTCTT CGGCGGGGAT CCAAGCATTC CAGCGCAGTA AGAATATGAT TGCCGACGGT TTCCCAAGCC CTGAAGTCTT TAGCGCATTG GGGATTTCAC TCTAA
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Protein sequence | MSYLAASIAA CVSLSACSSA PTSSGNSQTA IAETQAAVQE MQLSDTIAAH AEAFPTCVAN LQERARSEGL SEATIKDTVA SLQFVPKVIE LDQAQPEFSQ TFNNYFTKRA TDWRVNEGRR LLKKHRALLD KLAQEYGVPP QYILSFWGLE TNYGSYKGKM SVLDSLATLA CEPRRSGYFT TELMQALKLK EKYGFDKSTM VGSWAGAMGH TQFMPSAYAK YAIDGDGDGK ADLWNSTEDA LTSAANFLQH LGWQRNERWG REVILPRNFS YENLGAKQAQ PLSQWAAQSL VQSNGQPLPA IDMKAALYLP SGHTGPAFLG YENFNVIMRW NRSEFYAITV GHLADRINGG EPLKVAPPEQ PRLSREQIKQ LQTKLNESGF DVGKPDGVLG RNSSAGIQAF QRSKNMIADG FPSPEVFSAL GISL
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