| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2238 |
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| Symbol | |
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| ID | 4252810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2676245 |
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| End bp | 2677228 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638118863 |
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| Product | fimbrial protein |
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| Protein accession | YP_734367 |
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| Protein GI | 113970574 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.160036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00460081 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTCATGA GAAAAACTGT AAATTTTAAA TGGATTATTC CTATAATTTT GTGGGGTGCA
CAAAATCAAT CTGTTTATGC ATTTTATTGC TCTTTCAGTT CGACCACAAC AACAATTAAA
TTGAGTGATG TAGCAAACAT CGGTGATGAA ATCGTTCTTT ATAACTTAGC AGGGCAAACT
TGCAGTGGTT GGGGAAGCCC TAACTATCTA GATGCACTTA GAGTTTATAG TTTCACTGAA
TACAATATTT TGCAAGGTTC TGGACTTTCA GTGTTCTATG TCGATAATGG CTATTACTAC
AAATACCCAG AAGTTATTAA TCGCTGTGTT TGGCCTTGGA GTGGAAGTAC ATGTCCTTAC
TCTACCTTTA CGGATGGTAC CTACCCTGTC AGAGGACGGC TAGTGCTCAG ACGGACGGGC
ACCACCGCAT CCAACGTAAC TATTCCTGCA AACTCAAAAT TAGCCGAAAT TGGGTTTCAG
CAAAGAGGAT ATTCCAGCTC AGGACCAGCA TGGAGTAGTA ACGTTTATAA AATATCCGTC
TCAAATAGTG ACGCATTATC TTTTCCAACG TGTGATGTAG ATATTGGCAG TCAAAATCAA
ACTATAGCTT TTTCTCCAGT ATCTTCAAAT CAATTCTCGG GGATTGGGAC GACCGCTGAA
AGTGAATTGT TTTCAATAAA ATTAAATTGC AAAGCGGGTG TTTCTGTATA TGCAACCGTT
ACCGATTCGA ATCAACTAGG TAGCGCAGGC CCTAACTTAT CACTTGATCC AAGCTCAAGT
GCCGCAGGGG TTGGCATTCA AGTTTTGTAT AATGGCGCAC CATTGGGATT CGGAGTTGCA
AACCAATTTT ATGTAGCAGG AAACGCCTCC ACTCCGGAAG TATCACACAT AGTTCCCTTT
GAAGCACGTT ATGTTCAAAC TCAATTGAAA ATTATTCCTG GCTCGGTGTC TGCAAAAGCG
ATCATATCTT TTGAATATTT GTAG
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| Protein sequence | MFMRKTVNFK WIIPIILWGA QNQSVYAFYC SFSSTTTTIK LSDVANIGDE IVLYNLAGQT
CSGWGSPNYL DALRVYSFTE YNILQGSGLS VFYVDNGYYY KYPEVINRCV WPWSGSTCPY
STFTDGTYPV RGRLVLRRTG TTASNVTIPA NSKLAEIGFQ QRGYSSSGPA WSSNVYKISV
SNSDALSFPT CDVDIGSQNQ TIAFSPVSSN QFSGIGTTAE SELFSIKLNC KAGVSVYATV
TDSNQLGSAG PNLSLDPSSS AAGVGIQVLY NGAPLGFGVA NQFYVAGNAS TPEVSHIVPF
EARYVQTQLK IIPGSVSAKA IISFEYL
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