Gene Shewmr4_2225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2225 
Symbol 
ID4252798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2658257 
End bp2659675 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content40% 
IMG OID638118851 
Productnitrite transporter 
Protein accessionYP_734355 
Protein GI113970562 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2223] Nitrate/nitrite transporter 
TIGRFAM ID[TIGR00886] nitrite extrusion protein (nitrite facilitator) 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.190366 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0765968 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTAT CTCAAACCAC CCCAAAATCA CGTCAGGGAG TCATACATGA TTGGCACCCA 
GATGATAAAA AATTTTGGCT ACTCAAAGGT AGTAAAATTG CGAGAAAAAA CTTAATAATT
TCTATATGTT GTCTACTACT TTCATTTTCT GTTTGGATGT TATTTAGTGC GGTTGCTGTC
AATCTTAATA AAGTGGGTTT TAACTTTACG ACTGACCAGC TCTTTTTATT AACGGCTTTA
CCTTCGGTAT CAGGTGCATT ATTGCGCGTA CCTTATTCGT TCGTCATACC CATTTTTGGA
GGCCGCCGTT GGACCGCTTT CAGTACCGCC TTGCTAATGA TTCCGAGTCT TTGGTTAGGA
TTTGCTGTGC AAGATAATAC AACCCCCTTC AGCATATTTG TCATTATTGC ACTGTTATGT
GGGTTTGGTG GTGCCAATTT TGCTTCAAGT ATGGCCAATA TTAGTTTTTT CTATCCTAAG
GATAAACAAG GTAGTGCATT AGGGTTAAAT GGAGGATTAG GAAATCTAGG TGTCAGCGTT
ATGCAACTAT TCGTCCCCCT GATCATCTCA ATAGGAATCT TCAATATCTT TGGAGAAAGT
GCTGATATTC AAAGCAATGG CAACACCATT TGGTTACAAA ATGCCGCTTG GGTTTGGCTT
CCCTTCTTAT TAATCAGTAC TCTGATGGCT TGGTTCGGAA TGAATGATAT CGCTGCAGCT
AAAGCATCAA TCAAACAACA ACTTCCTGTA TTAAAGCAAG GTCATCTGTG GATTTTGAGT
TTACTGTATC TCGCTACATT TGGATCATTC ATCGGCTTTT CAGCAGGCTT TGCGATGCTA
ACAAGTACCC AATTCCCAAA TATCGATATT TTGCATTTCG CTTTTTTAGG CCCTTTAGTG
GGTGCATTAA TGCGCCCTGT TGGTGGCATT TTATCCGATA AATGGGGTGG TATTAATGTC
ACCATGGTAA ATTTTATGTT AATGGGACTC TTTGCCACAT TACTATTTTT TACCCTTCCC
ACAGCAGAAA CCGAGGGGCA TTTTAATGCT TTCTTCATAT TATTTTTGGC GCTTTTTGCT
ACCGCAGGAT TAGGCAGTGG CTCAACATTT CAAATGATTT CTGTCGTTTT TAGACGATTA
ATCGTGACAA GTGTTAAAGC AAAAGGGGGA AGTGACGCCC AGGCCCAAGT AAAAGCAGCA
ACAGATACTG CTGCCGCATT AGGGTTTATC TCAGCCATAG GTGCTATTGG AGGTTTTTTC
ATTCCCAAGG CATTCGGAAC ATCATTAGCA TTAACCGGTT CTCCCGTTAA TGCCATGAAG
GTCTTTATCT TTTGTTATAT TGCTTGCCTT TTTATCACAT GGTTGATTTA TGGGCGAAAA
ATTAAAACTA TGGCCACTGA AAAGATTTCA ACTGTTTAG
 
Protein sequence
MALSQTTPKS RQGVIHDWHP DDKKFWLLKG SKIARKNLII SICCLLLSFS VWMLFSAVAV 
NLNKVGFNFT TDQLFLLTAL PSVSGALLRV PYSFVIPIFG GRRWTAFSTA LLMIPSLWLG
FAVQDNTTPF SIFVIIALLC GFGGANFASS MANISFFYPK DKQGSALGLN GGLGNLGVSV
MQLFVPLIIS IGIFNIFGES ADIQSNGNTI WLQNAAWVWL PFLLISTLMA WFGMNDIAAA
KASIKQQLPV LKQGHLWILS LLYLATFGSF IGFSAGFAML TSTQFPNIDI LHFAFLGPLV
GALMRPVGGI LSDKWGGINV TMVNFMLMGL FATLLFFTLP TAETEGHFNA FFILFLALFA
TAGLGSGSTF QMISVVFRRL IVTSVKAKGG SDAQAQVKAA TDTAAALGFI SAIGAIGGFF
IPKAFGTSLA LTGSPVNAMK VFIFCYIACL FITWLIYGRK IKTMATEKIS TV