| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2191 |
|---|
| Symbol | |
|---|
| ID | 4252764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2618901 |
|---|
| End bp | 2619809 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638118817 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | YP_734321 |
|---|
| Protein GI | 113970528 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.163072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTTA CAACTCGCTC ACAGTTTTTA ACATCCACGC TCGTGCGGTG TTTAGTGTTT
TTCTACGGTA TTTTCGGCTT ATTGATGGCC GTGAGTTACG CCAATCCCCA AGCGCCCAAG
ATCCAATTAG CGACCGAATA TTCAAGGGAA AATAGTGCCC ACATCAGTGA TTTTCTCGTC
AGCGAAAAAC TCGATGGTGT GCGCGGTTAT TGGGATGGAA AACGTTTAGT GACTCGTCAG
GGCAATCCAA TCTTAGCGCC AAGTTGGTTT ACTGCGGACT TTCCAACCAC CCCAATGGAC
GGTGAGTTAT GGCTTGGGCG AGGGCAGTTT GAGGCGATAT CTGGGATTAT TCGCCAAATG
TCGCCGAAGG AGAGCGACTG GCAGAACGTA CGCTTTATGG TATTTGATTT ACCCGAGGCG
CAAGGGAGCT TTGAAACGCG CTATCAACAG ATGCAGACTC TGCTTGCAGG TAAATCGATT
TATCTTCAAG TCATTGAGCA GGTGAGGGTA GAGAGTATCG AGGCGCTTTA TCAAAAGTTG
GATGCCTTGG TAGCTCAGGG CGCCGAAGGT TTAATTCTGC ATAGGCGCTC AGCCTTGTAT
ACACCAGGGC GAAATCCTAA TGTGATGAAG TTAAAGCCTT ATTTGGATGC CGAAGCCAAG
GTGATTGGGC ATATAGCGGG TAAAGGGCAG TTTGCTGGGC AGATGGGGGC ATTAAGAGTG
CAAACACCGG ATGGCCGTGT CTTTAGTATT GGCACAGGTT TTACCCTTGC CGAGCGTCAG
CATCCACCCG CCATTGGCAC GCTTATCACC TACAAATATC TTGGATTAAC CGTCAATGGC
CTCCCGCGCT TTGCCAGTTA TTTGCGAATA AGAGCAGATA TGCCAGCTGA AGACAAAGAT
AAAGAATAA
|
|---|
| Protein sequence | MALTTRSQFL TSTLVRCLVF FYGIFGLLMA VSYANPQAPK IQLATEYSRE NSAHISDFLV
SEKLDGVRGY WDGKRLVTRQ GNPILAPSWF TADFPTTPMD GELWLGRGQF EAISGIIRQM
SPKESDWQNV RFMVFDLPEA QGSFETRYQQ MQTLLAGKSI YLQVIEQVRV ESIEALYQKL
DALVAQGAEG LILHRRSALY TPGRNPNVMK LKPYLDAEAK VIGHIAGKGQ FAGQMGALRV
QTPDGRVFSI GTGFTLAERQ HPPAIGTLIT YKYLGLTVNG LPRFASYLRI RADMPAEDKD
KE
|
|---|
| |