Gene Shewmr4_2176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2176 
Symbol 
ID4252749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2603622 
End bp2604776 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content48% 
IMG OID638118802 
Productribonuclease D 
Protein accessionYP_734306 
Protein GI113970513 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.67525e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTTTTAT GGAATGTGAT TAACCCACAG GAACTGGAGA AGAATTTGTC AGTGTTTCAG 
TATGTGAGCG ACGAAGCGAG CCTCAATGCC CTCGTAGCTC AATATCAACA GAGTCCGCTG
CTCGTATTAG ATACCGAGTT TGTGCGCACA CGTACCTATT ACGCTAAGCT TGGCCTTATT
CAAGCCTATG ATGGTAAAAC CTTAGCCTTA ATTGACCCTG TTGCCTTACC CGACCTCAGT
GCATTCTGGT CTTTGCTGGA TAATCCTAAC ATTATCAAAC TAGTGCACTC TTGCAGTGAG
GACTTAGAGG TCTTCGCCCA CTATGGTCAG CGTCAACCAA CGCCCTTATT CGATAGCCAA
ATTGCCGCCT CTTTATGTGG CATGGGCCAT GGCCTGGGTT ATGCCAAGTT AGTGGAAACC
TGTTTAGGTG AAGTGATTGA TAAAGGTGAG TCGCGCACCG ACTGGATGCG CCGCCCTTTG
ACTGAGGCGC AGCTTAGCTA CGCCGCCAAC GATGTGTTGT ATCTGTATCA ACTCTATCCG
CAACTCGCCG ACAAGCTTAA AGCGCAAGAT CGCTTAGGCT GGCTGTATGA AGAAGGTGAG
CGGATGACAG AAGGGCGCTT AGCGCCGCCG GATATGGATA CTGCGTACCT GAGAGTCAAA
AACGCTTTTC AGCTTACCGA GAATCAGCTG GCTTACCTTA AAGTGCTGGC GAAGTGGCGT
TTAGAAAAAG CCTTAGCGCG GGATTTAGCC TTGGGCTTTG TGATAAAAGA TCATGGTTTG
ATTGCTCTTG CGAAGAAACA ACCTAAGAGC ATGAGTGATT TGCTCAAACT GAACGATTTG
ACCGAGCAAG AGAAACGCAT TCACGGTAAA GATATTTTAC GGGTGATGCA GACCGCGGAT
TTAAACAATC CACCAGAATT AGTGGATGTC TTAGCGCTCA AACCAGGTTA CAAATCGGCC
TTTAAGAACA TAAAAACCTG CTTAACTGAA CTGTGCGAGC AGCATGCCAT CCCGATGGAA
ATGCTAGGCT CAAAACGTCA TATTCATGAG TATTTACAAT GGCGTTGGGA TAAGCAGCAG
GGTGAGTTAC CGACGGTCTT GAGTGGTTGG CGCGGACAAA TTGCCGCCGA ATCGTTGGCA
AAGCTTGAAG TTTAA
 
Protein sequence
MFLWNVINPQ ELEKNLSVFQ YVSDEASLNA LVAQYQQSPL LVLDTEFVRT RTYYAKLGLI 
QAYDGKTLAL IDPVALPDLS AFWSLLDNPN IIKLVHSCSE DLEVFAHYGQ RQPTPLFDSQ
IAASLCGMGH GLGYAKLVET CLGEVIDKGE SRTDWMRRPL TEAQLSYAAN DVLYLYQLYP
QLADKLKAQD RLGWLYEEGE RMTEGRLAPP DMDTAYLRVK NAFQLTENQL AYLKVLAKWR
LEKALARDLA LGFVIKDHGL IALAKKQPKS MSDLLKLNDL TEQEKRIHGK DILRVMQTAD
LNNPPELVDV LALKPGYKSA FKNIKTCLTE LCEQHAIPME MLGSKRHIHE YLQWRWDKQQ
GELPTVLSGW RGQIAAESLA KLEV