Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2149 |
Symbol | |
ID | 4252722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2572908 |
End bp | 2573792 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638118773 |
Product | LysR family transcriptional regulator |
Protein accession | YP_734279 |
Protein GI | 113970486 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.269804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.274984 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAAAA TAGAATTACT TGAGAGTTTT ATTGCGATAG CGGAATGCGG CAACTTGTCA AAAGCGGCAG ATAAAGTCTG TCGCACACAA TCAACCTTGA GTTTACAAGT CAAAAAGCTT GAAGAGGTCG TTGGACAATC GTTGTTGCTG CGAGACAACA AAGGCGTAGC CTTAACCGAG GCTGGTTTAA CTCTATTAAA TTACGCCTAT AAAATGATGC AACTCAACTC GCAGGCAATA CATGAATTAA AAGATTGCCC CAACCGAGAA ATGATTAGAT TAGGGGTGCC TACCGACTAT ATTGGATGTT ATTTAAACAG TTGTTTATTG GAATTTATCC GAGAATTCAC CTGTATCGAA CTCGTGATCG ACACTGATGT CAGTGGGAAT CTGTTTAAGC GCCTACAGCA GGGGGAATTT GATCTCATCG TGGCCACCCA TTGGCAAACA CCAATTAACG GTGAGTTGCT GTTCTCCCGC CGCTTTCACT GGGTTGCAGC CAAAGGTGGC AACGCACATA AACGCGAGAC GATTCCGATG GCGCTTTACC CAGAAAACTG CCCGATACGG GCGCAGGTAT TTGCCAACCA TCAACTCAGT ATGCGGCCAA TTCATGTATT GTTATCGACC CCATCACCAC AGGCCTTATG TTTGGCGGTA GAGAATGATC TTGTCATTGC GCCCATTGCC GAGTTTCGCA TTAATGAACA GATGCAAATA TTGGAGCCAC TCGAATATGG CTTACCACCA CTTCCACTCT TTAATGAATC TCTCTATTTA AATCCAGAAA CGCAAACAGA TGCCACAATT CAACTAATCG CTTTACTCAA AGCAAATGTA GATCATTTAG AAAATACTGA ATCATGCGTA ATTTCAGTGA GATAA
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Protein sequence | MLKIELLESF IAIAECGNLS KAADKVCRTQ STLSLQVKKL EEVVGQSLLL RDNKGVALTE AGLTLLNYAY KMMQLNSQAI HELKDCPNRE MIRLGVPTDY IGCYLNSCLL EFIREFTCIE LVIDTDVSGN LFKRLQQGEF DLIVATHWQT PINGELLFSR RFHWVAAKGG NAHKRETIPM ALYPENCPIR AQVFANHQLS MRPIHVLLST PSPQALCLAV ENDLVIAPIA EFRINEQMQI LEPLEYGLPP LPLFNESLYL NPETQTDATI QLIALLKANV DHLENTESCV ISVR
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