Gene Shewmr4_2148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2148 
Symbol 
ID4252721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand- 
Start bp2572130 
End bp2572837 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content44% 
IMG OID638118772 
ProductTetR family transcriptional regulator 
Protein accessionYP_734278 
Protein GI113970485 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.398076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.369487 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATTGTGA AGTTGCAATG TTATTGTTTG TCGGAATGTG ACGAGGTCGA GATGAGTAGC 
TGGGAGCAAA GGAGAGACTA CCTAACACAA GTTGCACTTC GCAGCTTGAG AGGGCACAAA 
ACGTTTGATT TATGTCGTTC TCATTTGGTG CAGGTGAGCC AAATATCGAA AGGCACTATC 
TACAATCATT TTACGACAGA AGCTGATCTT ATCGTTGCCG TCGCTTCTGC CCAATACGAT 
GAGTGGCTCT GCGCAGCAAA GCAGGATGTT CAGCGATATC CAGATCCTTT TAGCAGATTC 
TTATATCATC ACTGCTTTCG ACTTCATCAA GTCTTATCGC AACAACGGTT TGTGATTGAG 
CGTATTATGC CCAATCAAAC TTTATTATTT GAAGCGACAG AGAGTTGTCG GCAGCGATTT 
GAAACTCTAT TTGATGAATA CCATCAGTGG AATCGAAATA CGATTTCAGA GGTAGGGGAT 
ATACCCGGAT TTAATCGAAC CGAACTCGTC ATGGACTATC TTCGTGGCGC AATGATAAAC 
AGCGATGACT CCAATAGAAA AGCGGATGAT GTACAACTCT ATTGTCAATT TAGTTATGCG 
TTAACTCAGT TAATGGGGCA CTCGGATAAA CGTATTCCAA CTGAAGGCGT ATTTGCAAAC 
TGGCTGTCGA ACTTACCGAG TGGTGCGGCG GAGCTTTCGG CTGCTTAA
 
Protein sequence
MIVKLQCYCL SECDEVEMSS WEQRRDYLTQ VALRSLRGHK TFDLCRSHLV QVSQISKGTI 
YNHFTTEADL IVAVASAQYD EWLCAAKQDV QRYPDPFSRF LYHHCFRLHQ VLSQQRFVIE 
RIMPNQTLLF EATESCRQRF ETLFDEYHQW NRNTISEVGD IPGFNRTELV MDYLRGAMIN 
SDDSNRKADD VQLYCQFSYA LTQLMGHSDK RIPTEGVFAN WLSNLPSGAA ELSAA