| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2147 |
|---|
| Symbol | |
|---|
| ID | 4252720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2569315 |
|---|
| End bp | 2571327 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638118771 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_734277 |
|---|
| Protein GI | 113970484 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.251145 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.368531 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAA AAATCACTGG GATGTTAGCA CTGATTGGAG TGCTTTCGTT ATTTTGTCAA
TGGGTGGGTT GGAAGCTTAG GTTACCTGCA ATTTTACCCT TATTACTCTG TGGTTTATTG
TTAGGCCCAG CATTTGGGGT ACTCAATCCC GATGCGATAT TTGGGGATTT GCTGTTTCCC
ATCATTTCTC TCGGTGTTGC CGTTATCCTG TTTGAGGGCG CATTAACCCT CAATTTTAAA
GAGATTAAAG ATCATGGCCG CATGGTGACT CACTTAGTGA GCATCGGCAT GGTGATCACT
TGGGGTTGTA TCAGTGTCGC GACCTTTTAT TTGCTCAATT TTAGCTGGGA GGTCGCACTG
TTATTTGGCG CCCTTGTGGT GGTCACTGGT CCGACCGTGA TTGTCCCCAT GCTGCGCAGC
GTACGGCCTA AGTCGCAACT GGCGAGTATT TTACGCTGGG AAGGGATTGT GATTGACCCA
ATCGGCGCAC TCCTTGCAGT ATTAGTGTTT GAATATATTA CGGTATCAGG CGATCCCACT
AGCCATGTGC TCTTTGCATT GGGCTCCATG CTGACACTGG GTTTAGGTTT AGGTGCGGTG
TCGGGCTACT TAATTGGTCA AGTGATCCGC CGTAATCTAT TGCCCCATTA TTTACGTAAT
ACCGCAGTAT TAACCCTTAT GCTGGGGATT TTCGTCGGCT CCAACCTACT ACAGGAAGAG
TCGGGATTAC TCACTGTGAC TGTGATGGGG ATTTGGCTGG CAAATATGCG CGGTGTGGAT
ATTGCTGAAA TCCTTGAGTT TAAAGAAACG CTGACAGTAC TGCTTATCTC CGCACTATTC
ATCCTGTTAG CCGCAAGACT CGATTCGAAT GCCATGATGG ATTTAGGTTG GGGCGGTGTT
GGTGTACTCG CCGTGACCAT GCTTATCGCG CGGCCACTCA GTATTTGGGT GTCAGGCATA
GGGACGTCAC TCTCAAGAGC CGATAAGTGG TTCCTATGTT GGATTGCCCC GCGGGGGATT
GTGGCGGCGG CCGTATCTTC CTTATTCGCC ATTAAGTTAG AAGCCACCAA TGTGCAGGGC
GCCGATGCCA TCGTGCCCTT AGTATTTTTA ATCATTATCG GCACTGTCGT TATCCAAAGT
TTAACCGCGG GCCGCTGGGC GAAATACCTT GGAGTAACCT CGGGTTCTGC CCAAGGCCTA
CTTATCTTTG GTGCTTCAAA GTTTTCCCGC GAGCTGGCAA AAATCTTAAA GGCGAAGGAT
GTCAAAGTAC TGCTAGCCGA TAGCAACTGG GATAATATTC GCCTCGCGCG GATGGACAAT
ATTCCGGTCT ATTTTGGTAA TCCAGCCTCG GAACATGCTG AAACCTATAT GGATTTAACT
GGGATTGGTC GAGTGCTGAT CATGTCGCCT TATAAGCAGT TGAACCCACT GGTGACCTTT
TATTTTCAAG ATGTTTTAGG CTCTAAAAAG GTCTTTGGTC TTAACAATAC CGAGCAAGGC
AGCGCGCGTC ATCAATTGTC TGAGTCTTAC AAACAGCGGT TATGTTTGTT TGGTGATGCG
GTGTCCTACG CCAAAATTGC CAGCCAAATG GCGAAGGGGG CGCAGCTTAA AGTCACTAAC
TTAACTGAAA ACTTTACCTT CGAGCATTTC CGTAAGCGTT ACGGTGAAAC CGCGCTGCCG
CTCGTTTATC TAACCAAAGA GGGCAAAGTG GTAATTGTTT CAGGCAATGA GACTCAATTC
CCCAATGGCA TTGAGTTAAT TAGTTTATTG CCCGTTGAGG CGCTTGAAGA AGCCAAAATC
CAACAGGCGA TTGCCGAGCA AGAGGCAATC GCTGCACAGG CAAAAGCGGC GGAAGAAGCG
GCCCTTGCGA AAGCCAAGGC CGAGGCGGAA GCAGAAGCTG AGCGCCAACG GCTAGAGCAG
GAAGAACAAA TGAAGGCGTC TGAACAATCG CAACCCGAGA CAGGCTCACA AGAAGCCATA
GCAACCTCGG ATGAATCGCT CGCTAAGGGA TAG
|
|---|
| Protein sequence | MVEKITGMLA LIGVLSLFCQ WVGWKLRLPA ILPLLLCGLL LGPAFGVLNP DAIFGDLLFP
IISLGVAVIL FEGALTLNFK EIKDHGRMVT HLVSIGMVIT WGCISVATFY LLNFSWEVAL
LFGALVVVTG PTVIVPMLRS VRPKSQLASI LRWEGIVIDP IGALLAVLVF EYITVSGDPT
SHVLFALGSM LTLGLGLGAV SGYLIGQVIR RNLLPHYLRN TAVLTLMLGI FVGSNLLQEE
SGLLTVTVMG IWLANMRGVD IAEILEFKET LTVLLISALF ILLAARLDSN AMMDLGWGGV
GVLAVTMLIA RPLSIWVSGI GTSLSRADKW FLCWIAPRGI VAAAVSSLFA IKLEATNVQG
ADAIVPLVFL IIIGTVVIQS LTAGRWAKYL GVTSGSAQGL LIFGASKFSR ELAKILKAKD
VKVLLADSNW DNIRLARMDN IPVYFGNPAS EHAETYMDLT GIGRVLIMSP YKQLNPLVTF
YFQDVLGSKK VFGLNNTEQG SARHQLSESY KQRLCLFGDA VSYAKIASQM AKGAQLKVTN
LTENFTFEHF RKRYGETALP LVYLTKEGKV VIVSGNETQF PNGIELISLL PVEALEEAKI
QQAIAEQEAI AAQAKAAEEA ALAKAKAEAE AEAERQRLEQ EEQMKASEQS QPETGSQEAI
ATSDESLAKG
|
|---|
| |