Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2146 |
Symbol | fadE |
ID | 4252719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2566749 |
End bp | 2569196 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118770 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_734276 |
Protein GI | 113970483 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000466188 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.548318 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTACCC TACTTTGGAT CATCGCCATG ATCTTAGTGC TAGGAGCCCT AGCTTACCTT CGGGTATCTT TGCTCACTGC CACTATTGCA GCCGCTGTTG TGATGACAGC CGGATGGACA CTCGATGTTG TTGGCCCTAT CTCTTGGATT ATCTTCCTAG TGATCGCGCT GCCCCTCAAT ATCAGTGCAT TTAGACAAAA TGTTATCAGT CGCCCACTGA TGAAGATGTA CCGTGGCATC ATGCCCGAAA TGTCTTCTAC CGAAAAAGAA GCGATTGAAG CCGGTACCAC TTGGTGGGAA GCCGATCTGT TTGCGGGTAA CCCGAACTGG AAAAAACTCC ACAACTACCC TGTCGCTCGT TTAAGTGCCG ATGAGCAAGC CTTCTTAGAC GGTCCAGTTG AAGAAGTGTG CCGCATGGTG AACCAACATC AAGTATCACA TCAACTGGCT GATTTGCCTG CTGAAGTATG GCAATACCTG AAAGATCACG GCTTCTTCGC CATGATTATC AAGAAAAAAT ACGGCGGTTT AGAGTACTCA GCCTACGCCC AATCACGCGT GCTGCAAAAG CTTGCGGGTT TAAGCAGCGA GCTGGCATCC ACTGTAGGTG TACCTAACTC CTTAGGCCCT GGCGAACTGT TACAACACTA TGGTACGCCT GAGCAGCAAA ACCATTACCT GCCACGTTTA GCCAAAGGTT TAGAAGTCCC TTGTTTCGCA TTAACTAGCC CTGAGGCTGG TAGCGACGCG GGTTCTATCC CTGACTTTGG TATCGTGTGT AAAGGTCAAT GGGAAGGCGA AGAAGTCTTA GGTATGCGCT TAACCTGGAA CAAGCGTTAT ATCACCCTAG CGCCAGTTGC GACTGTATTA GGTCTGGCGT TTAAACTGCG TGACCCTGAA CACCTATTAG GCGACAAAGA AGAACTGGGC ATTACCTGCG CGCTGATCCC AACTGATGTT GAAGGCGTTG AAACAGGCCG TCGTCACTTC CCGCTGAACT GTATGTTCCA AAACGGTCCA ACTCGCGGTA AAGACGTATT CGTACCATTA AGCTTTATCA TTGGTGGTCC GAAAATGGCT GGCCAAGGCT GGCGTATGCT GGTTGAGTGT TTGTCTGTTG GCCGTGGTAT CACACTGCCA TCAAACTCTG CCGGTGGCGT AAAAACCGCA GCGCTTGCAA CGGGTGCCTA TGCGCGTATT CGTCGTCAAT TCAAACTGCC GATTGGTAAG TTAGAAGGGA TTGAAGAGCC AATGGCACGC ATCGGTGGTA ACGCCTACCT GATGGATGCA GTGACCTCAT TAACCACCAC TGGTATCGAC TTAGGTGAAA AACCTTCGGT TATCTCGGCT ATCGTGAAAT ATCACCTGAC CGATCGTATG CAGAAATGCG TTATCGACGC CATGGATATC CACGGTGGTA AGGGTGTGTG TTTAGGCCCG AACAACTACT TAGGTCGTGG CTATCAAGCG GCTCCGATTG CGATTACCGT TGAAGGTGCA AACATCCTGA CACGTTCGAT GATCATCTAT GGTCAAGGTG CAATCCGTTG TCATCCTTAT GTATTGGCTG AAATGGAGTC AGCGTTTGAC ACTGAGTCTG GCCAAGGCTT AGCCAACTTC GATGCAGCCA TCTTCGGTCA CATTGGTTTT GCGACCAGTA ACTTTGTCCG TAGCTTCTGG TTAGGTCTGA CATCAAGCCG TTTCTCTAAC GCGCCTTACT CAGATAAAAC CAAGCGTTAT TATCAACATA TGAACCGTTT CAGTGCCAAC CTAGCCCTGC TGTCAGACTT AGCCATGGCA ACCTTAGGCG GTAACTTAAA ACGTAAAGAA CGTATTTCTG CCCGTTTAGG CGATCTGTTA AGCCAGTTAT ACCTTGCTTC TGCAACTTTA AAACGTTACC AAGATGAAGG CCGTCAAACC GACGATCTAC CACTGGTGCA ATGGGCGGTT GAAGATGCTC TGTACAAGTT ACAGGCTTCA TTAGACGATT TACTGGATAA CTTCCCTATG GGTCTAGGCG GCGTACTACG TGCCATCATG TTCCCATTCG GCCGTCCACT GAAACGTCCA AGCGATGTGT TGGACCATAA AGTGGCTAAG ATCATGCAAA CCCCTTGTGA AAGCCGTGAT CGTTTAGGTA AAGGCCAATT CTGGACTAAC TCTGAGCACA ATGCTGTGGG TATCCAAGAG CAAACGCTGA AGGATATTCT GGCTGCCGAA CCTTTATTCG ATAAAGTCTG TAAGGCCAGT GGCAAGCGTT TACCTTTCAT GTGGTTAGAT AAAGTCGCCG CTGAAGGTAA AGCCTTAGGG GTATTAAGCG ACAGCGAAGT ACAACTGTTG GAACGTGCCG AAATCGGCCG TATGAAGTCT ATCAATGTGG ATGACTTTGA CCCAGCAGAG CTGCGCCCTG AAGTGGTATC TACCACTTCA CAGGAACGCG CAGCCTAA
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Protein sequence | MTTLLWIIAM ILVLGALAYL RVSLLTATIA AAVVMTAGWT LDVVGPISWI IFLVIALPLN ISAFRQNVIS RPLMKMYRGI MPEMSSTEKE AIEAGTTWWE ADLFAGNPNW KKLHNYPVAR LSADEQAFLD GPVEEVCRMV NQHQVSHQLA DLPAEVWQYL KDHGFFAMII KKKYGGLEYS AYAQSRVLQK LAGLSSELAS TVGVPNSLGP GELLQHYGTP EQQNHYLPRL AKGLEVPCFA LTSPEAGSDA GSIPDFGIVC KGQWEGEEVL GMRLTWNKRY ITLAPVATVL GLAFKLRDPE HLLGDKEELG ITCALIPTDV EGVETGRRHF PLNCMFQNGP TRGKDVFVPL SFIIGGPKMA GQGWRMLVEC LSVGRGITLP SNSAGGVKTA ALATGAYARI RRQFKLPIGK LEGIEEPMAR IGGNAYLMDA VTSLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGP NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMESAFD TESGQGLANF DAAIFGHIGF ATSNFVRSFW LGLTSSRFSN APYSDKTKRY YQHMNRFSAN LALLSDLAMA TLGGNLKRKE RISARLGDLL SQLYLASATL KRYQDEGRQT DDLPLVQWAV EDALYKLQAS LDDLLDNFPM GLGGVLRAIM FPFGRPLKRP SDVLDHKVAK IMQTPCESRD RLGKGQFWTN SEHNAVGIQE QTLKDILAAE PLFDKVCKAS GKRLPFMWLD KVAAEGKALG VLSDSEVQLL ERAEIGRMKS INVDDFDPAE LRPEVVSTTS QERAA
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