Gene Shewmr4_2146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2146 
SymbolfadE 
ID4252719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2566749 
End bp2569196 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content49% 
IMG OID638118770 
Productacyl-CoA dehydrogenase 
Protein accessionYP_734276 
Protein GI113970483 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000466188 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.548318 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTACCC TACTTTGGAT CATCGCCATG ATCTTAGTGC TAGGAGCCCT AGCTTACCTT 
CGGGTATCTT TGCTCACTGC CACTATTGCA GCCGCTGTTG TGATGACAGC CGGATGGACA
CTCGATGTTG TTGGCCCTAT CTCTTGGATT ATCTTCCTAG TGATCGCGCT GCCCCTCAAT
ATCAGTGCAT TTAGACAAAA TGTTATCAGT CGCCCACTGA TGAAGATGTA CCGTGGCATC
ATGCCCGAAA TGTCTTCTAC CGAAAAAGAA GCGATTGAAG CCGGTACCAC TTGGTGGGAA
GCCGATCTGT TTGCGGGTAA CCCGAACTGG AAAAAACTCC ACAACTACCC TGTCGCTCGT
TTAAGTGCCG ATGAGCAAGC CTTCTTAGAC GGTCCAGTTG AAGAAGTGTG CCGCATGGTG
AACCAACATC AAGTATCACA TCAACTGGCT GATTTGCCTG CTGAAGTATG GCAATACCTG
AAAGATCACG GCTTCTTCGC CATGATTATC AAGAAAAAAT ACGGCGGTTT AGAGTACTCA
GCCTACGCCC AATCACGCGT GCTGCAAAAG CTTGCGGGTT TAAGCAGCGA GCTGGCATCC
ACTGTAGGTG TACCTAACTC CTTAGGCCCT GGCGAACTGT TACAACACTA TGGTACGCCT
GAGCAGCAAA ACCATTACCT GCCACGTTTA GCCAAAGGTT TAGAAGTCCC TTGTTTCGCA
TTAACTAGCC CTGAGGCTGG TAGCGACGCG GGTTCTATCC CTGACTTTGG TATCGTGTGT
AAAGGTCAAT GGGAAGGCGA AGAAGTCTTA GGTATGCGCT TAACCTGGAA CAAGCGTTAT
ATCACCCTAG CGCCAGTTGC GACTGTATTA GGTCTGGCGT TTAAACTGCG TGACCCTGAA
CACCTATTAG GCGACAAAGA AGAACTGGGC ATTACCTGCG CGCTGATCCC AACTGATGTT
GAAGGCGTTG AAACAGGCCG TCGTCACTTC CCGCTGAACT GTATGTTCCA AAACGGTCCA
ACTCGCGGTA AAGACGTATT CGTACCATTA AGCTTTATCA TTGGTGGTCC GAAAATGGCT
GGCCAAGGCT GGCGTATGCT GGTTGAGTGT TTGTCTGTTG GCCGTGGTAT CACACTGCCA
TCAAACTCTG CCGGTGGCGT AAAAACCGCA GCGCTTGCAA CGGGTGCCTA TGCGCGTATT
CGTCGTCAAT TCAAACTGCC GATTGGTAAG TTAGAAGGGA TTGAAGAGCC AATGGCACGC
ATCGGTGGTA ACGCCTACCT GATGGATGCA GTGACCTCAT TAACCACCAC TGGTATCGAC
TTAGGTGAAA AACCTTCGGT TATCTCGGCT ATCGTGAAAT ATCACCTGAC CGATCGTATG
CAGAAATGCG TTATCGACGC CATGGATATC CACGGTGGTA AGGGTGTGTG TTTAGGCCCG
AACAACTACT TAGGTCGTGG CTATCAAGCG GCTCCGATTG CGATTACCGT TGAAGGTGCA
AACATCCTGA CACGTTCGAT GATCATCTAT GGTCAAGGTG CAATCCGTTG TCATCCTTAT
GTATTGGCTG AAATGGAGTC AGCGTTTGAC ACTGAGTCTG GCCAAGGCTT AGCCAACTTC
GATGCAGCCA TCTTCGGTCA CATTGGTTTT GCGACCAGTA ACTTTGTCCG TAGCTTCTGG
TTAGGTCTGA CATCAAGCCG TTTCTCTAAC GCGCCTTACT CAGATAAAAC CAAGCGTTAT
TATCAACATA TGAACCGTTT CAGTGCCAAC CTAGCCCTGC TGTCAGACTT AGCCATGGCA
ACCTTAGGCG GTAACTTAAA ACGTAAAGAA CGTATTTCTG CCCGTTTAGG CGATCTGTTA
AGCCAGTTAT ACCTTGCTTC TGCAACTTTA AAACGTTACC AAGATGAAGG CCGTCAAACC
GACGATCTAC CACTGGTGCA ATGGGCGGTT GAAGATGCTC TGTACAAGTT ACAGGCTTCA
TTAGACGATT TACTGGATAA CTTCCCTATG GGTCTAGGCG GCGTACTACG TGCCATCATG
TTCCCATTCG GCCGTCCACT GAAACGTCCA AGCGATGTGT TGGACCATAA AGTGGCTAAG
ATCATGCAAA CCCCTTGTGA AAGCCGTGAT CGTTTAGGTA AAGGCCAATT CTGGACTAAC
TCTGAGCACA ATGCTGTGGG TATCCAAGAG CAAACGCTGA AGGATATTCT GGCTGCCGAA
CCTTTATTCG ATAAAGTCTG TAAGGCCAGT GGCAAGCGTT TACCTTTCAT GTGGTTAGAT
AAAGTCGCCG CTGAAGGTAA AGCCTTAGGG GTATTAAGCG ACAGCGAAGT ACAACTGTTG
GAACGTGCCG AAATCGGCCG TATGAAGTCT ATCAATGTGG ATGACTTTGA CCCAGCAGAG
CTGCGCCCTG AAGTGGTATC TACCACTTCA CAGGAACGCG CAGCCTAA
 
Protein sequence
MTTLLWIIAM ILVLGALAYL RVSLLTATIA AAVVMTAGWT LDVVGPISWI IFLVIALPLN 
ISAFRQNVIS RPLMKMYRGI MPEMSSTEKE AIEAGTTWWE ADLFAGNPNW KKLHNYPVAR
LSADEQAFLD GPVEEVCRMV NQHQVSHQLA DLPAEVWQYL KDHGFFAMII KKKYGGLEYS
AYAQSRVLQK LAGLSSELAS TVGVPNSLGP GELLQHYGTP EQQNHYLPRL AKGLEVPCFA
LTSPEAGSDA GSIPDFGIVC KGQWEGEEVL GMRLTWNKRY ITLAPVATVL GLAFKLRDPE
HLLGDKEELG ITCALIPTDV EGVETGRRHF PLNCMFQNGP TRGKDVFVPL SFIIGGPKMA
GQGWRMLVEC LSVGRGITLP SNSAGGVKTA ALATGAYARI RRQFKLPIGK LEGIEEPMAR
IGGNAYLMDA VTSLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGP
NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMESAFD TESGQGLANF
DAAIFGHIGF ATSNFVRSFW LGLTSSRFSN APYSDKTKRY YQHMNRFSAN LALLSDLAMA
TLGGNLKRKE RISARLGDLL SQLYLASATL KRYQDEGRQT DDLPLVQWAV EDALYKLQAS
LDDLLDNFPM GLGGVLRAIM FPFGRPLKRP SDVLDHKVAK IMQTPCESRD RLGKGQFWTN
SEHNAVGIQE QTLKDILAAE PLFDKVCKAS GKRLPFMWLD KVAAEGKALG VLSDSEVQLL
ERAEIGRMKS INVDDFDPAE LRPEVVSTTS QERAA