Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2124 |
Symbol | |
ID | 4252697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2535895 |
End bp | 2537439 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638118748 |
Product | fumarase |
Protein accession | YP_734254 |
Protein GI | 113970461 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00166655 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCTC ACCATGAAAC GTCTGAAAAT GTAGTGATTA AACAAGCCGA CTTTATTGAA AGTGTGGCCG ATGCCCTGCA ATACATCTCC TATTATCATC CCAAAGATTT TGTGGATGCC ATGAGCGAAG CTTATGAGCG TGAGCAAAGT GCGGCGGCGA AGGATGCGAT TGCGCAAATT TTGATTAACT CGCGTATGTC TGCCGAAGGT AAACGCCCAC TGTGTCAAGA CACGGGTATT GTGACCACCT TCGTTAAGAT TGGTATGGGA GTTAAGTGGG ACAAAACCGA TATGACCGTG CAGCAAATGG TCGATGAAGG TGTGCGTCGT GCTTATACCA ATCCAGATAA CCCACTGCGT GCATCGATTG TGGCTGATCC TGCGGGTAGC CGTAAAAACA CCAAAGACAA CACGCCATCT GTAGTGCATA TCGATATGGT GCCAGGCAAT CATATTGAAG TCGCTATCGC AGCCAAGGGC GGCGGCAGTG AAAACAAAGC CAAGATGGTG ATGTTAAACC CATCTGACGA TATCGCCGCT TGGGTTGAAA AAACGCTGCC AACCATGGGC GCGGGCTGGT GTCCACCGGG TATGCTCGGC ATCGGTATTG GTGGCACCGC TGAAAAGGCT GCTGTGCTGG CGAAAGAAGC GCTGATGGAA AGCGTGGATA TCCATGAGTT AATGGCACGC GGTGCAGAAA CCAGCGAAGA AAAACTGCGT TTAGACATTT TCGAACGTGC TAACAACCTC GGTATTGGTG CGCAGGGTCT TGGCGGTTTA ACCACAGTGT TAGACGTGAA AATCAAATCT GCACCTACTC ATGCAGCATC AAAACCTGTG GTGATGATCC CGAACTGCGC GGCAACTCGC CACGTACACT TCCATTTAGA TGGTACTGGC CCTGCTGATC TTGCGCCGCC GACACTGAGC GACTGGCCAG AAATCACCCG CGAAGTGGGC AGCGATGTGC GCCGTGTTAA TTTAGACACA GTTACTCAAG CCGATATCGA GCAGTGGAAG AGCGGTGAAA CCATTCTGTT AAGCGGTAAA ATGCTCACCG GCCGTGATGC TGCCCATAAG CGTATCCAAA GCCTGATTGA AAGCGGTGAA GGTTTACCAG AAGGCGTGGA CTTTACTGGC AAGTTTATCT ACTACGTGGG CCCAGTTGAC CCAGTCGGTA ACGAAGTTGT GGGTCCTGCT GGCCCAACTA CCGCGACCCG TATGGACAAG TTCACCGATC TGATGCTGGA TAAAACCGGA CTGATGGGCA TGATTGGTAA GGCTGAACGT GGTCCAGCGA CCGTTGAGTC TATCAAGAAA CACAAAGCTG TGTACCTGAT GGCTGTGGGC GGCGCGGCTT ACTTAGTGTC GAAAGCCATT AAGAAATCCC GCGTAGTGGC GTTTGCCGAC TTAGGTATGG AAGCAATTTA CGAGTTTGAC GTACAAGATA TGCCAGTGAC TGTGGCGGTA GACTCAAACG GCGTGAATGC CCATGAAACT GGCCCTGCGA TTTGGAAAGT GAATATCGCT AACGCCAAAG CCTAA
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Protein sequence | MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI LINSRMSAEG KRPLCQDTGI VTTFVKIGMG VKWDKTDMTV QQMVDEGVRR AYTNPDNPLR ASIVADPAGS RKNTKDNTPS VVHIDMVPGN HIEVAIAAKG GGSENKAKMV MLNPSDDIAA WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAETSEEKLR LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGTG PADLAPPTLS DWPEITREVG SDVRRVNLDT VTQADIEQWK SGETILLSGK MLTGRDAAHK RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGNEVVGPA GPTTATRMDK FTDLMLDKTG LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KKSRVVAFAD LGMEAIYEFD VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NAKA
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