| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2067 |
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| Symbol | rnfD |
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| ID | 4252640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2461836 |
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| End bp | 2462885 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118691 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_734197 |
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| Protein GI | 113970404 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0541155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTTACCCGTA ATTTGCATAC TTCAACGGTT
ATGCAAAGGG TCATTTTATG CTTGTTACCC GGCCTTGTGG TGCAATGCGC CTTTTTCGGC
TGGGGCACAC TTATTCAAGT GTTACTGGCG ATTATCGTTG CCCTAAGCTG TGAAGCCGCG
GTGATGAAAC TGCGTAACCG CAGCATCAAA GCAAGCTTAA GCGATAACAG CGCTATGCTG
ACGGCGATCT TAATCGGGGT TGCGATCCCG CCGCTGGCAC CTTGGTGGAT GATCGTTATG
GGCACAGTGT TTGCGATTGT TATCGTCAAA CACCTCTACG GTGGCCTAGG CCATAACCTG
TTCAACCCCG CGATGGCCGC CTATGTGTTA CTGCTGGTTT CATTCCCTGT GCAGATGACC
AGTTGGATTG CGCCAAGTAC GGTTGCGCTC AATACCCCAA GTGTAATCGA TAGTTTGCAA
TTGATCTTCA ATGTCGGCGC CCATGGTGGC ATGGAGCAAT TCCGCCTCGG TATCGATGGG
ATCAGTATGG CGACTCCGCT CGATACCCTC AAAACAGATC TGTCCTTAGG GCTCACCACC
ACCGAAAGTA TGGCTAAAAG CATATTCGAT GGCGGCACTG GCGTTGGTTG GTTTTGGGTC
AATTTAGCCT ATTTGGCTGG CGGTTTAGTG CTGCTTAAAT TAAAAGCCAT CCGTTGGCAT
ATCAGCACCG GCGTCTTGGC GGGATTATTT GTGGCATCGA GCATTGGCTT TTTACTGTCG
CCCGATACTC AGGCAAGCCC ACTGTTCCAT TTATTCTCGG GCGCGACCAT GCTCGCCGCC
TTCTTTATTG CAACCGATCC TGTCACCGCG GCGACCAGTC CGCGTGGCCG TTTGATTTTC
GGCGCATTAA TTGGCGTCTT GGTCTATGTC ATTCGTACCC AAGGTGGCTA CCCCGATGCC
TTCGCCTTTG CCGTGCTGCT CGCAAACCTT TGCGCGCCAT TTATTGACTA CTATGTGCGT
CCGCGCACCT ATGGCCATTC AGCGCCCTAG
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| Protein sequence | MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLIQVLLA IIVALSCEAA
VMKLRNRSIK ASLSDNSAML TAILIGVAIP PLAPWWMIVM GTVFAIVIVK HLYGGLGHNL
FNPAMAAYVL LLVSFPVQMT SWIAPSTVAL NTPSVIDSLQ LIFNVGAHGG MEQFRLGIDG
ISMATPLDTL KTDLSLGLTT TESMAKSIFD GGTGVGWFWV NLAYLAGGLV LLKLKAIRWH
ISTGVLAGLF VASSIGFLLS PDTQASPLFH LFSGATMLAA FFIATDPVTA ATSPRGRLIF
GALIGVLVYV IRTQGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSAP
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