| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2026 |
|---|
| Symbol | |
|---|
| ID | 4252599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2412531 |
|---|
| End bp | 2414126 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638118642 |
|---|
| Product | dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_734156 |
|---|
| Protein GI | 113970363 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00246701 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000201314 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAG ATTTTATTTT GCCGGACATT GGTGAAGGCG TTGTCGAGTG CGAACTCGTC
GAGTGGTTGG TGCAAGAGGG CGATACGATT GCTGAAGATC AACCCATCGC CGATGTAATG
ACTGACAAAG CCTTAGTGCA AATTCCGGCG CCTTTTGCGG GAGTCGTGAC CAAGCTGTAT
TACGCCAAAG GCGATATCGC TAAGGTGCAT GCGCCGCTTT ATGCCGTGCA GATTGAGTCC
GACGAAGCCG CACCTGTTGC TGCTTCTCAA CCTGAAGTAC AGGCATCTAC TCAAACACCT
GCAAGCCAAT CCAGCGCGGT GGGTACGAGC GTAGAAGAAT TTCTGCTGCC CGATATTGGC
GAAGGCATTG TTGAGTGTGA ACTGGTCGAA TGGTTAGTCC AAGAAGGCGA TACTGTGGTT
GAAGATCAAC CCATCGCCGA TGTGATGACA GATAAAGCCC TAGTGCAAAT CCCTGCTATC
AAAGCGGGTA AAATTGTCAA ATTGCACTAC CGTAAGGGCC AGTTAGCGAA AGTACATGCA
CCACTATTTG CGATTGAGGT CGAAGGTGGC GTGAGTGCGC CAGTCAGCCA TGCACAGGAA
GCAAGCGCTG CCGCTGTGAA TACTGCAGCA CCAGCCGCTT GCGCGGCGGT GTCCTCGGAG
CCTGCTCGCC AAGGTAAAGC CTTAGCCAGT CCAGCCGTTC GCCGTATGGC ACGTGCCTTA
GATATCGATT TAAGTCGCGT CCCTGGTAGT GGTAAACATG GCCGTGTGTA TAAGGAAGAC
ATTACTCGCT TCCAAGCACA GGGTGGCGCT GTGCCTGCCG CTGCGCTAGT GGTAGCTGCC
CCAACTGTGG CTCAATCGAC CGTTTCTACC GCAGTGGCAA GCGCTGCACG GGGTGACATT
GTTGAGCCTA TCCGTGGCGT GAAAGCCGTG ATGGCAAAAA TGATGGTGGA ATCGGTATCC
ACCATTCCAC ACTTCACTTA TTGCGAAGAG TTTGATTTGA CAGACTTAGT CGCTCTGCGT
GAAAGCATGA AGGCCAAGTA TTCCTCCGAC GAAGTTAAGC TAACCATGAT GCCATTCTTT
ATGAAAGCCA TGTCGTTAGC CTTAACGCAG TTCCCTGTGC TTAACAGCCA AGTGAATGCT
GATTGTACGG AAATCACCTA CAAGGCGCGT CATAACATAG GTATGGCGGT CGACTCTAAG
GTGGGATTAT TGGTACCAAA CGTGAAGGAT GTGCAAGATA AGAGCATCCT CGAGGTTGCT
GCCGAAATCA CCCGCTTAAC CAATGCTGCA CGCAGCGGCC GTGTGGCGCC GGCGGATCTT
AAAGAAGGCA CCATCTCGAT TTCGAATATT GGCGCCTTAG GTGGCACAGT TGCAACGCCT
ATTATCAATA AGCCGGAAGT CGCGATTGTC GCATTAGGTA AGTTACAAAC CTTGCCGCGC
TTCAATGCGA AAGGTGAAGT CGAAGCGCGT CAGATCATGC AAGTGAGTTG GTCAGGGGAT
CACCGCGTTA TTGATGGCGG CACCATTGCT CGTTTCTGTA ACCTTTGGAA ACAATACCTT
GAGCAGCCGC AGGATATGCT ATTAGCCATG CGCTAA
|
|---|
| Protein sequence | MIKDFILPDI GEGVVECELV EWLVQEGDTI AEDQPIADVM TDKALVQIPA PFAGVVTKLY
YAKGDIAKVH APLYAVQIES DEAAPVAASQ PEVQASTQTP ASQSSAVGTS VEEFLLPDIG
EGIVECELVE WLVQEGDTVV EDQPIADVMT DKALVQIPAI KAGKIVKLHY RKGQLAKVHA
PLFAIEVEGG VSAPVSHAQE ASAAAVNTAA PAACAAVSSE PARQGKALAS PAVRRMARAL
DIDLSRVPGS GKHGRVYKED ITRFQAQGGA VPAAALVVAA PTVAQSTVST AVASAARGDI
VEPIRGVKAV MAKMMVESVS TIPHFTYCEE FDLTDLVALR ESMKAKYSSD EVKLTMMPFF
MKAMSLALTQ FPVLNSQVNA DCTEITYKAR HNIGMAVDSK VGLLVPNVKD VQDKSILEVA
AEITRLTNAA RSGRVAPADL KEGTISISNI GALGGTVATP IINKPEVAIV ALGKLQTLPR
FNAKGEVEAR QIMQVSWSGD HRVIDGGTIA RFCNLWKQYL EQPQDMLLAM R
|
|---|
| |