| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2022 |
|---|
| Symbol | |
|---|
| ID | 4252595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2408270 |
|---|
| End bp | 2409160 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638118638 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734152 |
|---|
| Protein GI | 113970359 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000238398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000213318 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAGACAAA ATCTAGTAAT AATTACATCA TTTACCCTCG CGATAAGCCT TTTCGGTTGT
GATAATGGCC GAAATATCGA AACGATTTGT AAAAATAATC CTGAAATTTG TGCCGATTTG
CATAAGGATG GATGGTGTTT AACCGAGAAA ACCCTGCTGA TCCAGAGCCG ATTCGACCTA
TTAGACAACA AAAATCCTAC GGGTAAGCAA CTTTACCAAC AGTTAACTTA CCTTGAAGAT
TACAGCCGTT GTATTGAATT GGCCTCAGGG GTGCAACATA TCATCCATAC GAATCGCACA
GCTGACCGAG CAAGAGCCTT TCGCCTAAGT ACAGAAAACC TCAGCCGTCT ACAGGAAGAA
ACCCGCGAAC GCCAAGACCC CTTTATGTCT TACTATCAAT GGACACGTTT TGGTGACACC
GATGCCTTAA ACCGACTATT AGCGCAAGAA AATGCCGGTG AAGTCACAGA GCCTTTTCTC
CTTGCACAAA TCGCCACCTA TTACAGCAAT CGAAATGCCA TCAAAGCGCA ACAACTCTAT
CTTAAAGTGT TTGCAGAAAT TCAATATGCC GACTTTGATC CCAACTGGTT GCTTGGGCTC
GCCTCAGCCT ATCGTCAAAC CCAAGCGTTT GAAAAAACAT ATATGCTGAC CAAAGCCAAT
TTACTACTTA CGCAGCAGAA GTATTCTGAA GATAAGATGC TAGCCTTAAT CGGTGGCGAC
AAGACGCTTG CGGCCAAATT AGATCAATAC GCCCAGAACT TAATCGACGC GTTAGAAGAT
GGCCTCTATT CGACCAGTCC GGTTGCGCTC TGGCTTGCTC CGCCCCAGAC GGAGGTCACA
CCGCCTGCGG CAACAACAAC TGTCGAGCCA GAGAAGCCAA ATTCGCCTTA A
|
|---|
| Protein sequence | MRQNLVIITS FTLAISLFGC DNGRNIETIC KNNPEICADL HKDGWCLTEK TLLIQSRFDL
LDNKNPTGKQ LYQQLTYLED YSRCIELASG VQHIIHTNRT ADRARAFRLS TENLSRLQEE
TRERQDPFMS YYQWTRFGDT DALNRLLAQE NAGEVTEPFL LAQIATYYSN RNAIKAQQLY
LKVFAEIQYA DFDPNWLLGL ASAYRQTQAF EKTYMLTKAN LLLTQQKYSE DKMLALIGGD
KTLAAKLDQY AQNLIDALED GLYSTSPVAL WLAPPQTEVT PPAATTTVEP EKPNSP
|
|---|
| |