Gene Shewmr4_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2015 
Symbol 
ID4252588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2399662 
End bp2400594 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content48% 
IMG OID638118628 
Productuniversal stress protein UspE 
Protein accessionYP_734145 
Protein GI113970352 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.55059e-09 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAGGATT ATCAAAAAAT ACTGGTAGTA GTCGACCCTA CGACAGAGCA TCAAGTTGCA 
CTCGCCCGAG CGGTGACCTT GGCCAGTAAA AGTAACGCCC ATGTGACTGT GTTTCTCTCT
ATTTTTGACT TCTCCTACGA AATGACATCG ATTCTATCGA GCCAAGAGCG CGAAGCCATG
CGCCAAGGTG TGATTGATCA GCGTCTGGCG TGGATCCAAG ATCTACTGAC CGCCTATAAC
CACCTGCAAC TCGATATTGA TACTCAAGTT ATTTGGCACA ATCGCCCATT TGAAAGCATC
ATCAACCATG CGATTGCAGG GCAATATGAT TTGATCGTCA AAGGCACCCA CGCCCACGAC
AAGTTAAAGG CCGTTATTTT TACTCCAACC GATTGGCATT TAATGCGTAA AGCGCCTGTG
CCCGTGTTGA TGGTTAAAGA TCATGATTGG CCTGAAGCGG GTAAGATCCT CTGCGCCGTC
AACGTGGCAA CCGAAGACAC CGATCATCAG ATGCTAAACG GCAAGATTAT CGAACATGCC
AAGGATTTAG CCGCAAAATT TGCCGCCGAA GTGCACTTAG TCAATGGTTA TCCCGGCACA
CCGGTGAATC TTGCCATTGA ACTGCCTGAT TTCGATGCAC AAACCTATAA CGACACCATT
CGCATGCAAC ATGAGCAACG AGTGCAATAC CTTGCCAATG CCTATGGTAT CGATACCCTG
CACTGCCATG TGAAAGAAGG CTTGCCAGAG GATGTGATCC CTGAGCTTGC CGAGCAACTC
GATGCCGAGC TGGTCATTTT AGGCACCGTC GGTCGGACTG GATTCTCGGC GGCGCTTATC
GGCAATACCG CAGAGCATGT GATTGATAGC ATTAACTGTG ATTTATTAGC CATCAAACCC
GATGGTTATA AATCGCCGCT TGAAGAGGCA TAA
 
Protein sequence
MKDYQKILVV VDPTTEHQVA LARAVTLASK SNAHVTVFLS IFDFSYEMTS ILSSQEREAM 
RQGVIDQRLA WIQDLLTAYN HLQLDIDTQV IWHNRPFESI INHAIAGQYD LIVKGTHAHD
KLKAVIFTPT DWHLMRKAPV PVLMVKDHDW PEAGKILCAV NVATEDTDHQ MLNGKIIEHA
KDLAAKFAAE VHLVNGYPGT PVNLAIELPD FDAQTYNDTI RMQHEQRVQY LANAYGIDTL
HCHVKEGLPE DVIPELAEQL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP
DGYKSPLEEA