Gene Shewmr4_2014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2014 
Symbol 
ID4252587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2398767 
End bp2399519 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content46% 
IMG OID638118627 
Productfumarate/nitrate reduction transcriptional regulator 
Protein accessionYP_734144 
Protein GI113970351 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.22436e-09 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACAATAG AGCAGAATAA AAACCGTCGT CCCGCCGCGA GTGGGTGCGC AATTCATTGT 
CACGATTGCA GTATGGGTAC CCTTTGTATT CCGTTTACCC TCAATGCCAA CGAGCTCGAT
CAGCTCGATG ACATCATTGA GCGTAAAAAG CCAATTCAAA AAGGTGAGCA GATTTTTAAA
TCAGGCGATC CATTAAAGTC CTTGTTCGCC ATCCGCTCTG GTACTGTCAA AAGTTATACG
ATTACCGAAC AGGGCGATGA ACAGATCACC GGTTTCCATT TAGCGGGCGA TGTGATTGGT
TTTGACGGTA TTCATGCTCA ATCCCACCAG AGTTTTGCCC AAGCCTTAGA AACCTCCATG
GTATGTGAAA TCCCCTTCAA TATTCTCGAT GAGCTTTCAG GCAGCATGCC CAAGTTACGC
CAACAAATCA TGCGCTTAAT GAGTAATGAA ATCATGAGCG ATCAAGAAAT GATTTTATTG
CTGAGCAAGA AAAACGCTGA AGAGCGCCTC GCCGCGTTTA TCAGCAATCT TGCAAATCGC
TTTGGCAACC GTGGTTTTTC TCCGAAAGAA TTCCGTTTAA CCATGACCCG TGGTGACATT
GGTAACTACC TTGGCTTAAC CGTAGAAACC ATCAGCCGCT TGTTAGGCCG TTTCCAAAAG
TCAGGTTTGA TTGAAGTGAA AGGCAAGTAC ATCACCATCC TTGACCACCA CGAACTGAAT
CTCTTGGCAG GTAATGCCAG GATCGCCAGA TAA
 
Protein sequence
MTIEQNKNRR PAASGCAIHC HDCSMGTLCI PFTLNANELD QLDDIIERKK PIQKGEQIFK 
SGDPLKSLFA IRSGTVKSYT ITEQGDEQIT GFHLAGDVIG FDGIHAQSHQ SFAQALETSM
VCEIPFNILD ELSGSMPKLR QQIMRLMSNE IMSDQEMILL LSKKNAEERL AAFISNLANR
FGNRGFSPKE FRLTMTRGDI GNYLGLTVET ISRLLGRFQK SGLIEVKGKY ITILDHHELN
LLAGNARIAR