Gene Shewmr4_2006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2006 
Symbol 
ID4252579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2391546 
End bp2392982 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content47% 
IMG OID638118619 
Productcbb3-type cytochrome c oxidase subunit I 
Protein accessionYP_734136 
Protein GI113970343 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3278] Cbb3-type cytochrome oxidase, subunit 1 
TIGRFAM ID[TIGR00780] cytochrome c oxidase, cbb3-type, subunit I 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00103508 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000337866 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAACC ATTCCCAGCC AACAGGCGCT GATTACAATT ACACCATTGT CCGCCAATTT 
GCCTTAACCA CAGTTTTGTG GGGTATTGTT GGTATGTCAG TCGGTGTATT AATTGCGGCT
CAGTTAATCT GGCCACATCT GAACTTTGAT ACTCCTTGGT TTACGTATAG TCGCTTGCGA
CCATTACATA CCAATGCGGT AATCTTCGCG TTCGGAACAT CAGCCCTCTT TGCAACATCC
TATTATGTCG TACAACGCAC CTGTCAAACC CGACTATTTG CACCTAAATT AGCTGCATTT
ACGTTTTGGG GATGGCAAGC CATCATTCTG TCAGCAGCCA TCACTCTGCC AATGGGTTAC
ACCAGCGGTA AAGAATATGC TGAATTAGAA TGGCCAATCG ATATTGCCAT CACCATCGTT
TGGGTATCCT ATGCAATAGT GTTCTTCGGC ACTATTATCA AACGAACAAC ATCGCATATT
TACGTAGCGA ACTGGTTCTT TGGTGCATTT ATCATTACGG TTGCCGTGCT TCACATCGTG
AACTCAATGG CCGTTCCTGT TAGCTTGTTC AAGTCATACT CTATGTACAG TGGCGCGGTC
GATGCCATGG TGCAATGGTG GTATGGTCAC AACGCGGTAG GCTTCCTGTT AACCGCAGGC
TTCTTAGGTA TGATGTACTA CTTCGTTCCT AAGCAAGCGG GTCGTCCTGT TTACTCATAT
CGTCTGTCGA TTGTGCACTT CTGGGCACTG ATCGCACTGT ACATTTGGGC AGGTCCTCAC
CACTTACACT ACACTGCCCT GCCAGACTGG ACTCAGTCTT TAGGTATGGT GATGTCACTG
ATCCTGTTCG CACCATCTTG GGGCGGTATG ATCAACGGTA TCATGACCTT ATCTGGCGCA
TGGCATAAAC TCCGTACTGA CCCAGTACTG CGTTTCTTAG TGGTTTCTCT GTCTTTCTAC
GGTATGTCGA CCTTCGAAGG TCCGATGATG GCCATCAAGA CAGTTAACGC TTTATCTCAC
TACACAGACT GGACTGTCGG TCACGTTCAC TCAGGCGCGC TAGGCTGGGT TGCAATGGTG
TCTATCGGTT CTCTGTATCA CTTGATCCCA GTACTGTTCG GCCACGGCCG TATGTACAGC
ATCAAGTTAG TCAACGTGCA TTTCTGGTTA GCGACTATCG GTACCGTACT TTACATCGTG
TCTATGTGGA TTTCGGGTGT AATGCAAGGT CTGATGTGGC GTGCAGTTAA CGCTGACGGT
ACTTTGACTT ATAGCTTTGT TGAAAGTCTG GAAGCTTCTT ATCCTTTCTA CTTCGTACGT
TTCCTCGGCG GTTGTTTCTT CTTAACCGGT ATGCTGATCA TGGCATACAA CGTGATCCGT
ACTGTGAAAG CCTCTAAAGA TTCATTGCCA GCACTGGCTG AAGCAAAAGC GGCTTAA
 
Protein sequence
MMNHSQPTGA DYNYTIVRQF ALTTVLWGIV GMSVGVLIAA QLIWPHLNFD TPWFTYSRLR 
PLHTNAVIFA FGTSALFATS YYVVQRTCQT RLFAPKLAAF TFWGWQAIIL SAAITLPMGY
TSGKEYAELE WPIDIAITIV WVSYAIVFFG TIIKRTTSHI YVANWFFGAF IITVAVLHIV
NSMAVPVSLF KSYSMYSGAV DAMVQWWYGH NAVGFLLTAG FLGMMYYFVP KQAGRPVYSY
RLSIVHFWAL IALYIWAGPH HLHYTALPDW TQSLGMVMSL ILFAPSWGGM INGIMTLSGA
WHKLRTDPVL RFLVVSLSFY GMSTFEGPMM AIKTVNALSH YTDWTVGHVH SGALGWVAMV
SIGSLYHLIP VLFGHGRMYS IKLVNVHFWL ATIGTVLYIV SMWISGVMQG LMWRAVNADG
TLTYSFVESL EASYPFYFVR FLGGCFFLTG MLIMAYNVIR TVKASKDSLP ALAEAKAA