Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1996 |
Symbol | |
ID | 4252569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2374981 |
End bp | 2376885 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638118609 |
Product | glycoside hydrolase family protein |
Protein accession | YP_734126 |
Protein GI | 113970333 |
COG category | [R] General function prediction only |
COG ID | [COG3940] Predicted beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000718487 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000398389 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTCACA CAATCAACAA ACGAATGGCT ACGCTTGCGC TGGCCATGGG ACTTAGTGCG ACCTGCTTGG GGGCAGGTAA CCTACATGCT GCAGAGAGTG CGAAGGGCGT GGATGGAAAC CGCATTACCG CTGCGACCTT TGCGAATCCG TTATTTCGAA ATGGAGCCGA TCCTTGGCTC GAATACCACA ATGGTAACTA TTACCTCACC ACCACCACGT GGACCTCTGA GCTGGTGATG CGTAAATCGC CCACCATTGC AGGGCTTGCC GATGCGCCGG CCCACAATAT TTGGAGCGGC ACCGATAAGT CCAACTGCTG TAATTTTTGG GCATTCGAAT TCCACCCTCT GCAAACTGCG CAGGGATTAC GTTGGTATGT AATTTACACC TCGGGCGTGG CAGAAAACTT CGATGGCCAG CGTAACCATA TCCTCGAGAG TGAAGGCAGT GACCCTATGG GGCCATACAA GTTTAAGGGC ACGCCAATGC CCGACCACTG GAATATCGAC GGCAGCTATT TGGAGTATAA AGGCCAGCTA TATTTCCTCT GGTCCGAATG GCACGGCCAA GATCAAGTCA ACTTGATTGC CAAGATGAGT AACCCTTGGA CCGTCGAGGG CGAACATAAG GTGATCACAG CGCCCATTCA CGACTGGGAA AAATCAGGCT TAAACGTCAA CGAAGGCCCT GAAATCATCC AGCATGAGGG CAGAACCTTT TTAGTTCACT CGGCAAGCTT TTGTAATACT GAGGATTATT CCTTAGCCGT GGTTGAACTC ACAGGTGACG ATCCTATGGA TCCCGCCGCA TGGACTAAGT ACGACAAGCC TTTCTTTAGC AAAGCCAATG GCGTCTATGG CCCTGGCCAC CATGGTTTCT TCAAGTCTCC CGATGGAAAA GAAGATTGGC TCATTTACCA TGGCAACTCC TCGGCCTCAG ACGGCTGTAG TGGTACCCGA GCGGCACGTG CTCAACCCTT TACTTGGGAT AACAAAGGCT TGCCTAAATT TGGCGAACCA TTGGCGGATA AAAAGCAATT GCCAGTCCCA AGTGGCGAGT TTGGCCCGAT AACCACTCAA GTGGAAGGCG TGAAATACCG CATCGTGAGC CGTGAAGTCG GTCAATGCCT AGTGACCAAT GCCAAGGGCC AGGTCAGTGT CGGTAAGTGC GAGGATGACA ACAGCCAATG GGTAATTGAT CCGAGTAACG ATGGCCTGTA TCGCTTTGCT AATGTGGGTC AGGGAACCTT TTTAACTCAG GCTCTGTGCC AAGATGAGTC TTCAACGGCA CTGAATTCGG CGCCTTGGGT CGCCTCCCGT TGTCAGCGTT GGTCGGTGGA TTCGACCCGT GAAGGCTGGT TCCGTTTCGC AAACGATCGC TCCATTGGCA ATCTGCAGGT GAAAAACTGC AGTAAAAAGG CCGGCGCAGA GGTGATTGCG GGGGAAAACC GTGTCAGTGA ATGCACCGAT TGGCGGATTG AGCCAGTCTC CACATTTGCC ATAGTCAACG CCCATAGCGG CCGAGTGGTT AGCGCCGAAC AATGTCAGCT TAAACCTAAT GCCAATGTGG CTCAGTTTGA ATACACCGGC GATGCCTGTC AGCAGTGGCA AGCAATGCCG ACAACCGATG GATTTTACCG TCTGCAATCC ATCCAACTTT CAAACAACAA GGCGCAACAA TGCCTTGTGA CCAACGAAGG TAATCTGGAG CTAGGGGCGT GTAATGCAAT CGACAGCGAG TTCCGTAGCG AGTTGATGCC AAATGGATCA TTAAGGCTAG TGTCTCGCAA GGGTGGTTCG TCCATGAAAG TGGCCAATGG CTCCTATGCC AATGGCGATA ACATAGTGGA AGACGTGTGG AAAAACACCA TTTCACAACA GTTCTATTTT AGAGAGGTGA AATAA
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Protein sequence | MTHTINKRMA TLALAMGLSA TCLGAGNLHA AESAKGVDGN RITAATFANP LFRNGADPWL EYHNGNYYLT TTTWTSELVM RKSPTIAGLA DAPAHNIWSG TDKSNCCNFW AFEFHPLQTA QGLRWYVIYT SGVAENFDGQ RNHILESEGS DPMGPYKFKG TPMPDHWNID GSYLEYKGQL YFLWSEWHGQ DQVNLIAKMS NPWTVEGEHK VITAPIHDWE KSGLNVNEGP EIIQHEGRTF LVHSASFCNT EDYSLAVVEL TGDDPMDPAA WTKYDKPFFS KANGVYGPGH HGFFKSPDGK EDWLIYHGNS SASDGCSGTR AARAQPFTWD NKGLPKFGEP LADKKQLPVP SGEFGPITTQ VEGVKYRIVS REVGQCLVTN AKGQVSVGKC EDDNSQWVID PSNDGLYRFA NVGQGTFLTQ ALCQDESSTA LNSAPWVASR CQRWSVDSTR EGWFRFANDR SIGNLQVKNC SKKAGAEVIA GENRVSECTD WRIEPVSTFA IVNAHSGRVV SAEQCQLKPN ANVAQFEYTG DACQQWQAMP TTDGFYRLQS IQLSNNKAQQ CLVTNEGNLE LGACNAIDSE FRSELMPNGS LRLVSRKGGS SMKVANGSYA NGDNIVEDVW KNTISQQFYF REVK
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