Gene Shewmr4_1995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1995 
Symbol 
ID4252568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2373911 
End bp2374978 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content49% 
IMG OID638118608 
Productarabinan endo-1,5-alpha-L-arabinosidase 
Protein accessionYP_734125 
Protein GI113970332 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.6265e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value9.68585e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCAGCTA TGAGAGTCAC ACCGAAAACA GCCCTAAAAC GTCACCTTAA GATGCTCAAT 
TGTGCGCTGC TAGGCGTATT GGGAACCCTA GGCCAAGCGA GTGCCAAACA GGTGAGTATT
CACGATCCTG TGATGGCAAA AGAGGCCGGA CAGTATTATC TCTTCAGCAC TGGCCCCGGC
ATTACCTATT ATTCCTCAAA GGATAAAATC CATTGGGAAT TAGCTGGGCG GGTATTCGAA
ACCGAGCCTA GCTGGGCAAA GGACGTTGCG CCAGAGTTTA ACGGCCATTT ATGGGCGCCG
GATATCATTG AGCATAACGG CTTGTTTTAT CTGTATTACT CAGTATCAGC CTTTGGTAAA
AACACCTCGG CCATTGGCGT GACAGTCAAT AAAACCCTCG ACAAAAACTC AAAGGAATAT
CAGTGGACAG ATAAGGGGAT CGTTATTCAA TCTGTGCCAA ATCGCGATGC ATGGAACGCG
ATTGATCCCA ATATTATTGT CGATGAGCAG GGTACACCTT GGATGAGTTT TGGCTCCTTT
TGGCAAGGGT TAAAACTGGT CAAACTCAAT CCAGACTTTA TCTCCATCTC CAAACCAGAG
GAGTGGCATA CGCTAGCCAA GTTAGAACGC CCCGCACTGC TTGGTGAAAC CGAGCCAGGC
CCTGCTGAAA TCGAAGCGCC GTTTATCTAT AAAAAAGATG ACTATTACTA TCTTTTTGTC
TCCTATGGCC TTTGCTGTCG TGGGGACGAC AGCACTTACC ACTTAGCCGT GGGCCGCACC
AAAACGGTGA CTGGGCCTTA CCTCGATAAA GAGGGCAAAG ACATGGCGCA AGGCGGCGGT
TCGGTTTTAC TGCATGGCAC TAAGGCTTGG CCGGGATTGG GCCATAACAG TGTTTATGCC
TTCGATGGCA AAGATTACTT AGTCTTTCAT GCCTACGAAT CGGCTGATAA TGGCTTACAA
AAACTCAAGA TGGCGGAACT GAGCTGGCGC CAAGGTTGGC CAGAGGTCGA TCCTAAGGCG
CTCAATCAAT ACCAGAGCGT ATTAGTTGCA CCCGAAGGAA CAAAATAA
 
Protein sequence
MPAMRVTPKT ALKRHLKMLN CALLGVLGTL GQASAKQVSI HDPVMAKEAG QYYLFSTGPG 
ITYYSSKDKI HWELAGRVFE TEPSWAKDVA PEFNGHLWAP DIIEHNGLFY LYYSVSAFGK
NTSAIGVTVN KTLDKNSKEY QWTDKGIVIQ SVPNRDAWNA IDPNIIVDEQ GTPWMSFGSF
WQGLKLVKLN PDFISISKPE EWHTLAKLER PALLGETEPG PAEIEAPFIY KKDDYYYLFV
SYGLCCRGDD STYHLAVGRT KTVTGPYLDK EGKDMAQGGG SVLLHGTKAW PGLGHNSVYA
FDGKDYLVFH AYESADNGLQ KLKMAELSWR QGWPEVDPKA LNQYQSVLVA PEGTK