Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1919 |
Symbol | |
ID | 4252493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2286682 |
End bp | 2289522 |
Gene Length | 2841 bp |
Protein Length | 946 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638118530 |
Product | DNA gyrase subunit A |
Protein accession | YP_734050 |
Protein GI | 113970257 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000233211 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000296006 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAAATC ACGTTTTTGG GCCGCTCAAT GATACGGATT ATGCGTTGTC GGCTAATTTT CAGGGGAACG AGCAGTTTAT GACTGATCTG GCATCATCTA TTTCGCCAAT TAATATCGAA GACGAACTAA AGAATTCGTA CCTTGATTAC GCCATGAGCG TCATCGTGGG ACGTGCATTA CCAGACGTGC GTGATGGCCT CAAGCCTGTG CATCGCCGCG TGCTGTTTGC CATGAGTGAA TTGAAGAACG ATTGGAACAA GCCGTACAAA AAGTCTGCCC GTGTGGTTGG TGACGTGATC GGTAAATATC ACCCCCATGG TGATTCAGCG GTTTACGATA CAATCGTACG TATGGCTCAG CCTTTCTCTC TGCGTTACAC CTTAGTCGAT GGTCAAGGAA ACTTCGGTTC GGTTGACGGT GACTCCGCAG CGGCAATGCG TTATACCGAA ATCCGTATGG ATAAGTTAGC GCACCAGCTC CTCGCCGATC TTGAAAAAGA AACCGTTGAC TATGTGCCAA ACTACGACGG CACTGAACAA ATTCCTGCGG TATTACCGAC ACGCGTACCT AACCTGTTGA TCAACGGTTC ATCGGGTATT GCGGTAGGTA TGGCGACTAA CATTCCGCCC CATAACTTAA CCGAAGTCGT TAAGGGCTGT TTAGCGCTGA TCGCCGATCC TGCGCTGTCT ATTGAACAGC TGATGGAACA TATTCCAGGC CCGGACTTCC CAACGGCTGC GATTATCAAT GGCCGTAAGG GCATTATCGA TGCCTATAAA ACAGGCCGCG GCCGTGCTGT CATGCGCGCG CTGGCTGAAG TCGAAACTGA AGACAACGGC CGTGAACGTA TTATCGTCAC CGAAATCCCT TATCAGGTGA ACAAGGCGAA ACTCATCGAG AAAATCGCTG AGTTAGTCAA AGATAAGAAG ATTGAAGGCA TCAGCGGTCT GCGCGACGAG TCTGACAAAG ACGGTATGCG CATCGTTATC GAAATCAAAC GCGGTGAAGT GGGTGAAGTT GTCCTGAACA ATCTCTATGC CCAGACACAG ATGCAATGTT CTTTTGGTAT CAACATGGTG GCATTGACCA ATGGTCAGCC TAAGTTGTTC AACTTAAAAG AAATGCTCGA GTGCTTTATC CTGCACCGCC GTGAAGTGGT GACTCGTCGT ACCGTATTCG AACTGCGTAA AGCGCGAGAA CGCGCCCATA TTCTTGAGGC ATTAGCGGTT GCGCTGGCCA ACATCGACCC GATTATTGCG CTGATCAAAG CTTCGCCAAC GCCAGCAGAC GCTAAAGTCA AACTGGTTGA GCAGGGCTGG GCACTTGGCC ATGTACAGGG CATGCTTGAA AAAGCGGGTG ACGATGCGGC GCGTCCTGAA TGGTTAGAGC CAGAATTCGG TATCCGTGAT GGCTTATATT ACCTGACTGA GCAACAGGCT CAGGCGATTC TAGAGCTGCG TTTACACCGT TTAACTGGTC TTGAGCACGA TAAGATCATC GCCGAATACG AAGAACTGCT CGAGTTCATC GCGGGTCTGC TGTTTATTCT GCGCAGCCCT GAGCGTTTGA TGGAAGTGAT CAAAGAAGAG CTAGAAGAAA TTCTTGCTGA ATACGGTGAT GCTCGCCGCA CTGTCATCAA CGCCAATGAA ATTGATATGA GTCTTGAAGA CTTAATCAAC GAAGAAGACG TGGTTGTGAC CCTGTCACAC TTAGGTTACG CCAAGTACCA ACCGCTGAGC GATTATCAAG CCCAGCGCCG TGGTGGTAAG GGTAAAGCCG CAACTAAGGT GAAAGACGAA GATTTCGTTG AAAAACTGCT GGTTGCCAAC ACTCACGATA CCATTTTGTG CTTCTCAGAT TTCGGTAAGA TGTACTGGCT TAAGGTCTAT CAATTACCGC TGGCGAGCCG TACTTCCCGT GGTCGTCCGA TTGTTAACTT ACTGCCGCTG TCCGATGGTG AACGCATTAC TGCGATTCTA CCAGTGCGTG AATACGCAGA AGATAAGTAC ATTATCATGG CGACCTCTAA CGGTACCGTG AAGAAAACTG CGCTGACAGC TTATAGCAAC CCACGTGCTA ACGGCATTAT CGCCGTGAAC CTGAAAGACG GTGACCAACT GATCGGTGTC GATATCACCA ACGGTGATGA TGAGATCATG TTGTTCTCGA ACGAAGGTAA AGTGGTTCGC TTTAAAGAAG GCGAAGAAGT GTCCGTACTC GATGAAAACG GCAACCCAGT GCTGGATGAA GAAGGTAACC CACAAATCAA CTTCAAGGGC GTGCGTCCAA TGGGTCGCGG CGCGACCGGT GTTCGCGGTA TCAAGCTTGA AGAAGGTCAA AAAGTGGTGT CTCTCATCGT ACCTAAGGGC GATGGCGCTA TCTTAACCGT GACCGAAAAC GGCTATGGTA AACGTACTGA ACTGTCTGAA TACCCATCTA AGAGCCGCGC GACTAAAGGT GTGGTATCGA TCAAGGTGAG TGAGCGTAAC GGTGCGGTTG TTGGCGCGGT ACAAGTTGGC GGTAATGACG AAATCATGCT GATCAGCGAT AAAGGTACCT TAGTCCGTAC GCCTGCGAAC GGTGTGTCAA TCATCGGCCG TAACACCCAA GGTGTGACCA TTATCCGTAC GGCTAGTGAT GAGAAAGTGG TTGGTCTGCA ACGTATCGAT GAGATCCAAG GCGACGAAGA TGAAGTCGAG CTGGATGAAA ACGGTATGCC AATCGTCCCA GTTGTCGCTG AAGGTAACTC TGTTCATGAA GAGCCTTTAG AAGAGGAACT GGAAGAAGAA TTAGACGAAG ACGAAGACGA AGAGCTTGAC GACGAGCAAG ACGAAGACTA A
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Protein sequence | MPNHVFGPLN DTDYALSANF QGNEQFMTDL ASSISPINIE DELKNSYLDY AMSVIVGRAL PDVRDGLKPV HRRVLFAMSE LKNDWNKPYK KSARVVGDVI GKYHPHGDSA VYDTIVRMAQ PFSLRYTLVD GQGNFGSVDG DSAAAMRYTE IRMDKLAHQL LADLEKETVD YVPNYDGTEQ IPAVLPTRVP NLLINGSSGI AVGMATNIPP HNLTEVVKGC LALIADPALS IEQLMEHIPG PDFPTAAIIN GRKGIIDAYK TGRGRAVMRA LAEVETEDNG RERIIVTEIP YQVNKAKLIE KIAELVKDKK IEGISGLRDE SDKDGMRIVI EIKRGEVGEV VLNNLYAQTQ MQCSFGINMV ALTNGQPKLF NLKEMLECFI LHRREVVTRR TVFELRKARE RAHILEALAV ALANIDPIIA LIKASPTPAD AKVKLVEQGW ALGHVQGMLE KAGDDAARPE WLEPEFGIRD GLYYLTEQQA QAILELRLHR LTGLEHDKII AEYEELLEFI AGLLFILRSP ERLMEVIKEE LEEILAEYGD ARRTVINANE IDMSLEDLIN EEDVVVTLSH LGYAKYQPLS DYQAQRRGGK GKAATKVKDE DFVEKLLVAN THDTILCFSD FGKMYWLKVY QLPLASRTSR GRPIVNLLPL SDGERITAIL PVREYAEDKY IIMATSNGTV KKTALTAYSN PRANGIIAVN LKDGDQLIGV DITNGDDEIM LFSNEGKVVR FKEGEEVSVL DENGNPVLDE EGNPQINFKG VRPMGRGATG VRGIKLEEGQ KVVSLIVPKG DGAILTVTEN GYGKRTELSE YPSKSRATKG VVSIKVSERN GAVVGAVQVG GNDEIMLISD KGTLVRTPAN GVSIIGRNTQ GVTIIRTASD EKVVGLQRID EIQGDEDEVE LDENGMPIVP VVAEGNSVHE EPLEEELEEE LDEDEDEELD DEQDED
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