Gene Shewmr4_1919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1919 
Symbol 
ID4252493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2286682 
End bp2289522 
Gene Length2841 bp 
Protein Length946 aa 
Translation table11 
GC content50% 
IMG OID638118530 
ProductDNA gyrase subunit A 
Protein accessionYP_734050 
Protein GI113970257 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000233211 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.96006e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCAAATC ACGTTTTTGG GCCGCTCAAT GATACGGATT ATGCGTTGTC GGCTAATTTT 
CAGGGGAACG AGCAGTTTAT GACTGATCTG GCATCATCTA TTTCGCCAAT TAATATCGAA
GACGAACTAA AGAATTCGTA CCTTGATTAC GCCATGAGCG TCATCGTGGG ACGTGCATTA
CCAGACGTGC GTGATGGCCT CAAGCCTGTG CATCGCCGCG TGCTGTTTGC CATGAGTGAA
TTGAAGAACG ATTGGAACAA GCCGTACAAA AAGTCTGCCC GTGTGGTTGG TGACGTGATC
GGTAAATATC ACCCCCATGG TGATTCAGCG GTTTACGATA CAATCGTACG TATGGCTCAG
CCTTTCTCTC TGCGTTACAC CTTAGTCGAT GGTCAAGGAA ACTTCGGTTC GGTTGACGGT
GACTCCGCAG CGGCAATGCG TTATACCGAA ATCCGTATGG ATAAGTTAGC GCACCAGCTC
CTCGCCGATC TTGAAAAAGA AACCGTTGAC TATGTGCCAA ACTACGACGG CACTGAACAA
ATTCCTGCGG TATTACCGAC ACGCGTACCT AACCTGTTGA TCAACGGTTC ATCGGGTATT
GCGGTAGGTA TGGCGACTAA CATTCCGCCC CATAACTTAA CCGAAGTCGT TAAGGGCTGT
TTAGCGCTGA TCGCCGATCC TGCGCTGTCT ATTGAACAGC TGATGGAACA TATTCCAGGC
CCGGACTTCC CAACGGCTGC GATTATCAAT GGCCGTAAGG GCATTATCGA TGCCTATAAA
ACAGGCCGCG GCCGTGCTGT CATGCGCGCG CTGGCTGAAG TCGAAACTGA AGACAACGGC
CGTGAACGTA TTATCGTCAC CGAAATCCCT TATCAGGTGA ACAAGGCGAA ACTCATCGAG
AAAATCGCTG AGTTAGTCAA AGATAAGAAG ATTGAAGGCA TCAGCGGTCT GCGCGACGAG
TCTGACAAAG ACGGTATGCG CATCGTTATC GAAATCAAAC GCGGTGAAGT GGGTGAAGTT
GTCCTGAACA ATCTCTATGC CCAGACACAG ATGCAATGTT CTTTTGGTAT CAACATGGTG
GCATTGACCA ATGGTCAGCC TAAGTTGTTC AACTTAAAAG AAATGCTCGA GTGCTTTATC
CTGCACCGCC GTGAAGTGGT GACTCGTCGT ACCGTATTCG AACTGCGTAA AGCGCGAGAA
CGCGCCCATA TTCTTGAGGC ATTAGCGGTT GCGCTGGCCA ACATCGACCC GATTATTGCG
CTGATCAAAG CTTCGCCAAC GCCAGCAGAC GCTAAAGTCA AACTGGTTGA GCAGGGCTGG
GCACTTGGCC ATGTACAGGG CATGCTTGAA AAAGCGGGTG ACGATGCGGC GCGTCCTGAA
TGGTTAGAGC CAGAATTCGG TATCCGTGAT GGCTTATATT ACCTGACTGA GCAACAGGCT
CAGGCGATTC TAGAGCTGCG TTTACACCGT TTAACTGGTC TTGAGCACGA TAAGATCATC
GCCGAATACG AAGAACTGCT CGAGTTCATC GCGGGTCTGC TGTTTATTCT GCGCAGCCCT
GAGCGTTTGA TGGAAGTGAT CAAAGAAGAG CTAGAAGAAA TTCTTGCTGA ATACGGTGAT
GCTCGCCGCA CTGTCATCAA CGCCAATGAA ATTGATATGA GTCTTGAAGA CTTAATCAAC
GAAGAAGACG TGGTTGTGAC CCTGTCACAC TTAGGTTACG CCAAGTACCA ACCGCTGAGC
GATTATCAAG CCCAGCGCCG TGGTGGTAAG GGTAAAGCCG CAACTAAGGT GAAAGACGAA
GATTTCGTTG AAAAACTGCT GGTTGCCAAC ACTCACGATA CCATTTTGTG CTTCTCAGAT
TTCGGTAAGA TGTACTGGCT TAAGGTCTAT CAATTACCGC TGGCGAGCCG TACTTCCCGT
GGTCGTCCGA TTGTTAACTT ACTGCCGCTG TCCGATGGTG AACGCATTAC TGCGATTCTA
CCAGTGCGTG AATACGCAGA AGATAAGTAC ATTATCATGG CGACCTCTAA CGGTACCGTG
AAGAAAACTG CGCTGACAGC TTATAGCAAC CCACGTGCTA ACGGCATTAT CGCCGTGAAC
CTGAAAGACG GTGACCAACT GATCGGTGTC GATATCACCA ACGGTGATGA TGAGATCATG
TTGTTCTCGA ACGAAGGTAA AGTGGTTCGC TTTAAAGAAG GCGAAGAAGT GTCCGTACTC
GATGAAAACG GCAACCCAGT GCTGGATGAA GAAGGTAACC CACAAATCAA CTTCAAGGGC
GTGCGTCCAA TGGGTCGCGG CGCGACCGGT GTTCGCGGTA TCAAGCTTGA AGAAGGTCAA
AAAGTGGTGT CTCTCATCGT ACCTAAGGGC GATGGCGCTA TCTTAACCGT GACCGAAAAC
GGCTATGGTA AACGTACTGA ACTGTCTGAA TACCCATCTA AGAGCCGCGC GACTAAAGGT
GTGGTATCGA TCAAGGTGAG TGAGCGTAAC GGTGCGGTTG TTGGCGCGGT ACAAGTTGGC
GGTAATGACG AAATCATGCT GATCAGCGAT AAAGGTACCT TAGTCCGTAC GCCTGCGAAC
GGTGTGTCAA TCATCGGCCG TAACACCCAA GGTGTGACCA TTATCCGTAC GGCTAGTGAT
GAGAAAGTGG TTGGTCTGCA ACGTATCGAT GAGATCCAAG GCGACGAAGA TGAAGTCGAG
CTGGATGAAA ACGGTATGCC AATCGTCCCA GTTGTCGCTG AAGGTAACTC TGTTCATGAA
GAGCCTTTAG AAGAGGAACT GGAAGAAGAA TTAGACGAAG ACGAAGACGA AGAGCTTGAC
GACGAGCAAG ACGAAGACTA A
 
Protein sequence
MPNHVFGPLN DTDYALSANF QGNEQFMTDL ASSISPINIE DELKNSYLDY AMSVIVGRAL 
PDVRDGLKPV HRRVLFAMSE LKNDWNKPYK KSARVVGDVI GKYHPHGDSA VYDTIVRMAQ
PFSLRYTLVD GQGNFGSVDG DSAAAMRYTE IRMDKLAHQL LADLEKETVD YVPNYDGTEQ
IPAVLPTRVP NLLINGSSGI AVGMATNIPP HNLTEVVKGC LALIADPALS IEQLMEHIPG
PDFPTAAIIN GRKGIIDAYK TGRGRAVMRA LAEVETEDNG RERIIVTEIP YQVNKAKLIE
KIAELVKDKK IEGISGLRDE SDKDGMRIVI EIKRGEVGEV VLNNLYAQTQ MQCSFGINMV
ALTNGQPKLF NLKEMLECFI LHRREVVTRR TVFELRKARE RAHILEALAV ALANIDPIIA
LIKASPTPAD AKVKLVEQGW ALGHVQGMLE KAGDDAARPE WLEPEFGIRD GLYYLTEQQA
QAILELRLHR LTGLEHDKII AEYEELLEFI AGLLFILRSP ERLMEVIKEE LEEILAEYGD
ARRTVINANE IDMSLEDLIN EEDVVVTLSH LGYAKYQPLS DYQAQRRGGK GKAATKVKDE
DFVEKLLVAN THDTILCFSD FGKMYWLKVY QLPLASRTSR GRPIVNLLPL SDGERITAIL
PVREYAEDKY IIMATSNGTV KKTALTAYSN PRANGIIAVN LKDGDQLIGV DITNGDDEIM
LFSNEGKVVR FKEGEEVSVL DENGNPVLDE EGNPQINFKG VRPMGRGATG VRGIKLEEGQ
KVVSLIVPKG DGAILTVTEN GYGKRTELSE YPSKSRATKG VVSIKVSERN GAVVGAVQVG
GNDEIMLISD KGTLVRTPAN GVSIIGRNTQ GVTIIRTASD EKVVGLQRID EIQGDEDEVE
LDENGMPIVP VVAEGNSVHE EPLEEELEEE LDEDEDEELD DEQDED