| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1897 |
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| Symbol | |
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| ID | 4252471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2258740 |
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| End bp | 2261553 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638118508 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734028 |
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| Protein GI | 113970235 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0415273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTTAG TGCTCCAGCT TATCGTGATC CTGTGTTGCA CACTCTTAAG TAGCGCAGTT
AACGCCAGTC AAGGACAGAC TGAGTCACTG ATTGTGGTGA TGGGGGAAGA CAGCTTTCCC
TATCAGTTTG TCGACAACGA CGGCGAAGCC ACGGGACTAT TAGTCGATCT CTGGAAGGAA
TGGGGCAAGC GCACCGATAC ACCATTAGTG TTTGTGGCGC GGCATTGGAA TGAATCTTTG
GTGCAATTAC AGCAAGGCAA AGCCCAAGTG CATATTGGGA TGGGGCAGAC TCCTGAACGT
GAACAATTGT TTGATTTCGC ACAGCCTATC GCTAATGTCA GCACCTATTT ATACCTGCAT
AAATCCTTAC AAGGCAAAAA GTCCATCAAG GAACTTATTC CTTATCAAAT CGGCATTGTG
AGCGGCTCAT CCCATGAGGC GGAGCTGCGC CGTATCGAAC CGAATTTAGT CTTCAAATAT
TATGAGAGCC GTGAAAAACT GCTGGCGGGT GTTGCAGCGG GAGAGACGGT TGTGTTTGCC
GGACTCGATG GTTATCTTCG CGATCCCGCC TCCAGTCAAG CCATTGCAGG TAGCTTTCCG
ATCAGTGCGC GTATCCCCAT CAAAGCCATG CAGTTTGTCC CCGCGGTGAT GAAAGGTAAT
CACGGCTTAG TCAAGAAGAT TAATAAAGGC TTTCAGGCGC TCGATCCGCG TTTTGTGCAA
CAAACCGAGC GGCGCTGGCT TGGGTATCAT GGTCAAAAGG CTGGCCTAGT GGTGGCCATG
CAATTGGGCG TTGAACCCTT TGTTGATCTC GGCGTTGACG GTTTGCCCCA TGGGCTTTAT
GTGGATCTGT GGCAATTATG GTCGGCAAAA ACGGGTATCA ATGTCGATTT TATCCCAGGC
GACATGAATG CCACCGTCAA CGATGTGCGT CAAGGTTTAG CCGATGCGCA TATTGGTTAC
CCAGAAAGTG ACGATCTGAA AACCGGCTTA ACCCGTGCGT GGCAACTCTA TACGGTGAAG
AGTCGGCTGT TCTTATATCA ACAACAACTG ACCGATTTGC AGAGTTTAAA GGGCAAACGT
ATCGGTGTTG TGCCTACGGC ACCTTATTTA GTGGCGCTGC GTAAAGCGCT GCCCGACATT
ACTCTGCGTT ATTACGACAA TATGGATAAC ATGGTGGCGG GGGCGAGATC TGGGGAAATT
GTCGGCTTTG TGGCTGCGGG GGCATGGACT TCCCATTATT TATTGCAAAA TAAGGCCTGG
TCCGAATTTC ACCAATATCC TGAGCTTGAG TTTCCGACCG ATGTGTATGT GCTCACGCGA
AGTGACGATC CAGGCTTAAC CCAACGCATC GCTAATGGTT TTCGCAGCAT TAGCATGCAG
GAATTTGCCG AAGTTGAGCA GAAATGGATG CTGAATCCTA AGGACCGTAT TTTTAATCAG
AAGGGATTAC ATGGTACTCA GCTCTCAAGT AGCGAACAGG ATTACCTCGC ACAATTAGGT
GAAGTTAAGT TAGGTTACTT AAAACAGTGG CCACCGATGG AGTTTAACGA TGACGAGGGT
CAATTTGCGG GGATTAATAG TGATGTAAGC CATATCCTCG CCGAGCAATT GCAGATAAAT
CTTCGACCCG TTGCCTTCGA TGATTGGCAA TCGCTGATCA GTGCTTTACG CTCGGGGGAA
ATTGCGCTTG CGGGTAGTAT TGCCCAAACG GCTGAACGAC AACAATACTT AGCTTTTAGT
GATCCCTACT GGCCATCGCC GTGGGGTTTA GTGTCACAGC TTGAGCAGGT GTCGGTATTT
AATCTGGCGC AATTGGCGGG GCAAAGAGTC GCTGTGGTGG AGGGGTACCA TCTTGTGGCA
CAACTGATGG CGTTGCAGCC TTCGCTTAAG CTCGTGTTGG TGCAAGATAT CCAGTCGGGA
CTCGCTGCGG TCAATGAGGG TCATGCGGAT GTATTTATCG ACAAAGTAGT GACGCTGGCC
TCTGAGTTAA AAACGGGCCA ATATCCGCTA CTCAAAATGT CGCTACTCAG TGATTTAGCC
GATCAGCACA GCCACTTTGG ACTTAATCCG CAATATGCGC CTTTGGTTCC CTTAATCAAT
CGTGTGTTAG CGCAAATCGA CCTGCATACT CAGCAACAAA TCTATTCCCA TTGGGTGAGT
TTCTCCCTTG ATTCGGACAA TAGCCGCTAT GTGCAATGGA TCCGCTATCT ATTGGTTGGT
GCGCTAAGCT TAGCGGTCGT TATGGTTGCG GTATTAATGG TGAATCGTCG CTTAAACTTG
GAGATCACTC GCCGCATTGC CGCAGAAAAA CGTTTACAAC ACGTTGCCAG CCACGATGCT
TTAACCCAGT TACCTAATCG GGCACTCTTG GATGACAGAT TGTCACAGGC TTTGTTGGCC
CATCGGCGGG ATCATAGTCA CTTTGCCTTA CTGTTTATCG ATTTAGACAA CTTTAAACAG
ATTAATGATC AATATGGTCA CCCGGTAGGA GATGCGTTGT TATTGCAAGT GGCGGGATTA
CTGACCAAAG CCATTCGTCA TTCTGATACA GTAGCAAGAT TCGGGGGAGA TGAGTTTGTG
ATCCTGCTAA ATCGTGTGCA AGATCTCGAT GCTGCCACCC AAGTTGCTGA TAATATTCTG
CACTCGCTTT CGTCACCTTT TAGCGTAGAA GGGGTGACAG TCGAGGTTGC CATCAGCATA
GGTGTGGTGA TTTATCCCCG CGATGGCGAT ACGGCCATCG AGTTAATGAA GAAAGCTGAC
CAACTGATGT ATCAAGCCAA AACGGCGGGT GGCCGTTGCT ACCGCCTAGC TTGA
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| Protein sequence | MKLVLQLIVI LCCTLLSSAV NASQGQTESL IVVMGEDSFP YQFVDNDGEA TGLLVDLWKE
WGKRTDTPLV FVARHWNESL VQLQQGKAQV HIGMGQTPER EQLFDFAQPI ANVSTYLYLH
KSLQGKKSIK ELIPYQIGIV SGSSHEAELR RIEPNLVFKY YESREKLLAG VAAGETVVFA
GLDGYLRDPA SSQAIAGSFP ISARIPIKAM QFVPAVMKGN HGLVKKINKG FQALDPRFVQ
QTERRWLGYH GQKAGLVVAM QLGVEPFVDL GVDGLPHGLY VDLWQLWSAK TGINVDFIPG
DMNATVNDVR QGLADAHIGY PESDDLKTGL TRAWQLYTVK SRLFLYQQQL TDLQSLKGKR
IGVVPTAPYL VALRKALPDI TLRYYDNMDN MVAGARSGEI VGFVAAGAWT SHYLLQNKAW
SEFHQYPELE FPTDVYVLTR SDDPGLTQRI ANGFRSISMQ EFAEVEQKWM LNPKDRIFNQ
KGLHGTQLSS SEQDYLAQLG EVKLGYLKQW PPMEFNDDEG QFAGINSDVS HILAEQLQIN
LRPVAFDDWQ SLISALRSGE IALAGSIAQT AERQQYLAFS DPYWPSPWGL VSQLEQVSVF
NLAQLAGQRV AVVEGYHLVA QLMALQPSLK LVLVQDIQSG LAAVNEGHAD VFIDKVVTLA
SELKTGQYPL LKMSLLSDLA DQHSHFGLNP QYAPLVPLIN RVLAQIDLHT QQQIYSHWVS
FSLDSDNSRY VQWIRYLLVG ALSLAVVMVA VLMVNRRLNL EITRRIAAEK RLQHVASHDA
LTQLPNRALL DDRLSQALLA HRRDHSHFAL LFIDLDNFKQ INDQYGHPVG DALLLQVAGL
LTKAIRHSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL HSLSSPFSVE GVTVEVAISI
GVVIYPRDGD TAIELMKKAD QLMYQAKTAG GRCYRLA
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