| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1863 |
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| Symbol | |
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| ID | 4252437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2216081 |
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| End bp | 2217550 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638118474 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_733994 |
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| Protein GI | 113970201 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0805796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC ATATAGTAGT GGCCTTGACG GCAATGAGTT TGCTGGGGGG ATGCAGTATG
TCTCCAGATT ATGCACCGCC AAAGGTGAAA GTCAGTGAAC TGTATTTAAA TGCGCCGACC
GAGGGCGTGA GCACAGAAGG AGTGGGCTAC CAAGCCTGGT GGCACAAGTT TAATGACCCT
CAACTCAATG CGCTGGTGGC GAAGGCGCAG CAACAAAATA TTAGTCTGCA GATCGCCAGC
GAGCGGGTCC GTGCTGCACG GGCCTATCAA GCCGCAGTGT CATCATTAAA AGTGCCAACC
ATTTCAGTGG GCGCGGGATA CCTCGATATG CGTATCAGTG AAAATGATCC GCTGATGGGC
GGTGCGGTTG GGGGCATAGG TCTGCCCGAT AGTTTGGGCG GTGGCAAGCT TAAGCTAATG
AATCGCGATC CTAACAGCAC CACAGTGGGC GCAACCATTG CTTGGGAGGC GGATTTATTT
GGCCGAATAG CGAGTTTAAG TCAGGCCGCT GAAATCCGCG CCGAACAGGC ACAATTGTAT
CGTGCCAATC TGGCCACCCT AATGACTGCG GAAGTGATAG ACAACTATTT ACAATACCGT
GGCACGCAGG AGCGTATGAC AATCGCAAGG CAAAACATCG CGGAGCAAGC TGAAGTGTTG
GCCTTGGTGG AATCATTGGA ACGTAATGGC TATGGCTCAC CACTGGATGT CGCCAATGCT
AGGGCTGCGC TTGCCGCCAG TGAGGCCATG TTACCCATGC TAAGTTCGGC CGAGCAGGCA
CACTTACATC GATTAGCGAT TTTATTGGGG GAAAATCTGA CCGAGACTTC AGGGCGTTTA
AGCGCAGCAG CCTTGCCCGC GATGAAGCAA TTCATCCCAA CGGGCGTTCC TTCCGAGTTG
CTGACACGCC GCTTAGATAT TGCGATTGCT GAGCGTGAGA TGGCCGCAAA AAATCAAGAA
CTGGGCGCGG CGATTGCGGC TAAGTATCCG AGCTTTTTCT TGACGGGGGC GCCGGGATTA
TCGGCCGATC ATATCGACGA TCTTTTCTCA TCGGATTCCC TTACCTGGGC TCTAGGTGCG
GGAGTGAGTT GGAATGTGTT CGATGGTGGT CGCACTCAAG CCATGGTGGA GATACAGGAA
GCGGGTTTTA AAACCGCAGC GCTTAGCTAT CAGCAGGCGG TGAACAATGC CATTAATGAA
GTTGAAACAG TGCTAAAGCA TTACGGTAAT AACCAGCAAT ATCATCGCTT TATTGCTAAA
GCTGAGGCGC AGTCTGAGAT TGCTGTGCAA AAAGCAACAT CGCTTTATCG TGCTGGGTTA
GAAAACCACT TGAGCGTGTT AAATGCGCAG AATGTGAAAA ACAATATGCA GGATGCGGAA
GTGTTAGCTC GCCTACAAAC GGCCTCGAGT GTGGTGTCAC TCTACAAGGC CTTGGGTGGC
GATTGGACAC TGGCAAATGC CATGGATTAA
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| Protein sequence | MNKHIVVALT AMSLLGGCSM SPDYAPPKVK VSELYLNAPT EGVSTEGVGY QAWWHKFNDP
QLNALVAKAQ QQNISLQIAS ERVRAARAYQ AAVSSLKVPT ISVGAGYLDM RISENDPLMG
GAVGGIGLPD SLGGGKLKLM NRDPNSTTVG ATIAWEADLF GRIASLSQAA EIRAEQAQLY
RANLATLMTA EVIDNYLQYR GTQERMTIAR QNIAEQAEVL ALVESLERNG YGSPLDVANA
RAALAASEAM LPMLSSAEQA HLHRLAILLG ENLTETSGRL SAAALPAMKQ FIPTGVPSEL
LTRRLDIAIA EREMAAKNQE LGAAIAAKYP SFFLTGAPGL SADHIDDLFS SDSLTWALGA
GVSWNVFDGG RTQAMVEIQE AGFKTAALSY QQAVNNAINE VETVLKHYGN NQQYHRFIAK
AEAQSEIAVQ KATSLYRAGL ENHLSVLNAQ NVKNNMQDAE VLARLQTASS VVSLYKALGG
DWTLANAMD
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