| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1821 |
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| Symbol | |
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| ID | 4252395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2160991 |
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| End bp | 2162694 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638118432 |
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| Product | nickel-dependent hydrogenase, large subunit |
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| Protein accession | YP_733952 |
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| Protein GI | 113970159 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.545248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC GCGTTGTTAT CGACCCTATC ACCCGTATTG AGGGTCATTT ACGTATCGAA
GTCGAAGTTG ATGAGAATAA TGTCATCAAC AAAGCATGGT CATCCTCTAC CCTGTGGCGT
GGTATTGAAG TCATCCTCAA GGGCCGCACA CCAATGGACG TGGGGCTGAT CGTGCAGCGG
ATCTGCGGTG TTTGTACCTA TTCCCACTAT CGCTGTGGTA CTGAAGCGGT GGAAAATGCC
TTAGGCATTC AAATCCCGTT AAACGCGAAA TACCTGCGCT CCTTGATGCA AACCTCGCTC
TATATGCATG ACCATATAGT GCACTTCTAT CATCTACACG GTTTAGACTG GGTGGATGTC
GTGTCTGCCT TAAGCGCCGA TCCCGCCAAG GCTGCACAAG TTGCCCTTAA ATATACCGAC
AAGCCGATTG CCGCGGGCGA AGGCGAATTA AGAGCGGTGC AAGAGCGGGT TAAAGGCTTT
GTCGAAACCG GCAAACTCGG CCCCTTCGCT AACGCTTACT GGGGCAATGG CACCTATAAA
TTTACCCCAG AGCAAAACCT GATTGCCCTG TCGCACTACC TCAAAGCCCT TGAAGTACAA
AGAGTTGCCG CCGAAATGCT GGCGATTTTC GGGGGTAAAC AGCCGCATCC ACAATCATTG
GTTGTCGGCG GTGTCACCTC AGTGCGCGAT ATGTTAAGCC CTGCGCGCCT GCAGGAGTGG
AAACAAAAAC ACGCGATTGT GGCCGACTTT ATTCTGCGTG CCTATCAAGC GGATATCGTC
ATGGCGGCAG AAGCCTTTGG TGGTGAAGCC AGCGTACTTG GCGGCGTGAA CGTTAAAAAC
TTCATGGCGA CCAATGACTT TGTGCTTGCC AATGGCGAAT ATCTGTTCGA CCAAGGCGTG
ATCATGAAGG GCGACTTAGC GGGCGTGAGC GATATTAACC CAGAGCTTAT CGCCGAAGAC
GTCAGCCATG CTTGGTATAG CGCCGATGCG CCGCAGCATC CCTACGATGG CACAACTATC
CCCAACTACA CAGGCTTTGT TGAGCGCGAT ACAGTTTACG GCAAACTGCC CACCTTAGAT
GGCGATGGCA AATACTCTTG GGTAAAATCG CCCCGCTATC AAGGCGAACC CGTCGAAGTG
GGTCCATTGT CCTGCCTGCT GGTGAGCTAT GCCCGTGGCA ACAAAGTGGT GGTCGATGCC
GTCAATGCGC TGCTGGCTCG CACGGGTCTA CCGGTTGAAG CCCTGTTCAC CACTTTAGGC
CGCACCGCGG CGCGGATGCT GCAAACGGTT ATCGTGGCGC AGGAAGGTCT GAAAACCTTC
GATGCCCTGT TAACCAATAT TCAATCCGAT GAAACCACCT ATGTGAAACC CCATATCGAC
CCAAGTCGTG AATATGTGGG TCACGCCATG ATTGAAGCGC CACGCGGCAT GTTAAGCCAC
TGGATCCGCA TCAAAAACGG TGTCATTGAG AACTATCAAG CCGTGGTGCC CACCACCTGG
AACGCAGGCC CTGTGGATGC TAATGGCAAG ATTGGCCCCT ACGAAGCCTC ACTCATTGGT
TTGAAACTGG AAGATCCCAC TAAGCCCCTT GAGGTGATAC GTATTATTCA CTCATTCGAC
CCTTGCATGG CGTGTTCAGT ACACGTGATG GATTTCAAAG GTCAAGCACT GAGCGAGTTC
CGTGTCAGCC CCAATGGTCA ATAA
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| Protein sequence | MSKRVVIDPI TRIEGHLRIE VEVDENNVIN KAWSSSTLWR GIEVILKGRT PMDVGLIVQR
ICGVCTYSHY RCGTEAVENA LGIQIPLNAK YLRSLMQTSL YMHDHIVHFY HLHGLDWVDV
VSALSADPAK AAQVALKYTD KPIAAGEGEL RAVQERVKGF VETGKLGPFA NAYWGNGTYK
FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKQPHPQSL VVGGVTSVRD MLSPARLQEW
KQKHAIVADF ILRAYQADIV MAAEAFGGEA SVLGGVNVKN FMATNDFVLA NGEYLFDQGV
IMKGDLAGVS DINPELIAED VSHAWYSADA PQHPYDGTTI PNYTGFVERD TVYGKLPTLD
GDGKYSWVKS PRYQGEPVEV GPLSCLLVSY ARGNKVVVDA VNALLARTGL PVEALFTTLG
RTAARMLQTV IVAQEGLKTF DALLTNIQSD ETTYVKPHID PSREYVGHAM IEAPRGMLSH
WIRIKNGVIE NYQAVVPTTW NAGPVDANGK IGPYEASLIG LKLEDPTKPL EVIRIIHSFD
PCMACSVHVM DFKGQALSEF RVSPNGQ
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